Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach2g01417 CTAGTTATCACCGTTGAAGATGCAGCAACAGAGGCTAAAACAACAGGCAATGATGCAGCAATCCCTCTATCACCACCCTGGTCTCCTTGCTGCTCCTCAGATAGAGCCTATCTTGAGTGGAAATCTGCCTCCTGGCTTTGATTCCAGTACATGCCGCAGTGTGTATGTTGGGAACATTCATCCCCAGGTTACGGAATCTCTTCTTCAAGAGGTTTTCTCAAGTACAGGTCCTCTTGAAGGATGCAAGATCATTAGAAAAGAGAAGTCATCCTTTGGTTTTGTGGATTACTTTGATCGCAGAGCTGCTGCAGTTGCTATTTTGTCTCTCAATGGGAGATATATTTTTGGGCAGCCTATTAAAGTCAACTGGGCATATGCTAGCAGCCAGAGGGAGGATACATCAGGTCAATTTAATATTTTTGTTGGTGATCTTAGCCCTGAGGTTACTGATGCAACACTGTTTGCTTGCTTTTCTGTATATCCAAGCTGTTCTGACGCTAGAGTTATGTGGGATCAGAAAACTGGTCGCTCCAGGGGATTTGGTTTTGTTTCTTTTCGGAGTCAACAGGAGGCACAAAGTGCAATAAATGATTTAAATGGAAAATGGCTCGGAAGTAGACAGATTCGTTGTAACTGGGCCACTAAAGGGGCTAATAATAGCAATGATGACAAGTCGGGTACAGATTCAAAAAGTGTTGTGGAGTTAACAAATGGAACATCTGAAGAAGGCCAAGAAAAGTCCAACGATGATGCTCCAGAGACGAATCCTCAGTATACTACTGTCTATGTTGGCAATCTTGCTCCAGAGGTTACTTCTGTTGAACTCCACCGTCATTTTCATGCACTTGGTGCTGGAACTATTGAGGATGTTCGGGTGCAACGTGATAAAGGATTTGGTTTTGTTAGATACAGTACACATGCTGAAGCAGCTCTTGCTATACAGATGGGTAATGCTCGGATTCTGTTTGGCAAGCCTATCAAGTGCTCCTGGGGTAGCAAGCCTACTCCTCCAGGAACAGCGTCTACTCCTCTTCCCCCACCCGCAGCTGCACATATGCCAGGCATTTCAGCCGCTGATCTTGCACAAATGGCTCTGAGCAAGATGGGCGGTGCTCAAGCTCTTATGCATCAACACGGTCAGCATGCACTGAAGCAGGCAGCCATGGGAATGGGTGCCCCTGGGGCTAGTTTTGGTGCAGGATACCAGGGCCTTGCTACTTCTCAGCACCTGATGTATTATCAGTAA 1246 0.4607 MQQQRLKQQAMMQQSLYHHPGLLAAPQIEPILSGNLPPGFDSSTCRSVYVGNIHPQVTESLLQEVFSSTGPLEGCKIIRKEKSSFGFVDYFDRRAAAVAILSLNGRYIFGQPIKVNWAYASSQREDTSGQFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRSQQEAQSAINDLNGKWLGSRQIRCNWATKGANNSNDDKSGTDSKSVVELTNGTSEEGQEKSNDDAPETNPQYTTVYVGNLAPEVTSVELHRHFHALGAGTIEDVRVQRDKGFGFVRYSTHAEAALAIQMGNARILFGKPIKCSWGSKPTPPGTASTPLPPPAAAHMPGISAADLAQMALSKMGGAQALMHQHGQHALKQAAMGMGAPGASFGAGYQGLATSQHLMYYQ 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach2g01417 408 FunFam oligouridylate-binding protein 1-like isoform X2 129 225 - -
Bach2g01417 408 Gene3D - 232 331 IPR012677 -
Bach2g01417 408 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 253 327 IPR000504 GO:0003723
Bach2g01417 408 SMART rrm2_1 47 116 IPR003954 GO:0003676
Bach2g01417 408 SMART rrm2_1 132 205 IPR003954 GO:0003676
Bach2g01417 408 FunFam Oligouridylate-binding protein 1C 230 331 - -
Bach2g01417 408 CDD RRM1_PUB1 48 118 - -
Bach2g01417 408 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 46 120 IPR000504 GO:0003723
Bach2g01417 408 SUPERFAMILY RNA-binding domain, RBD 244 332 IPR035979 GO:0003676
Bach2g01417 408 MobiDBLite consensus disorder prediction 208 251 - -
Bach2g01417 408 SMART rrm1_1 132 205 IPR000504 GO:0003723
Bach2g01417 408 SMART rrm1_1 254 323 IPR000504 GO:0003723
Bach2g01417 408 SMART rrm1_1 47 116 IPR000504 GO:0003723
Bach2g01417 408 MobiDBLite consensus disorder prediction 208 236 - -
Bach2g01417 408 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 133 203 IPR000504 GO:0003723
Bach2g01417 408 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 255 321 IPR000504 GO:0003723
Bach2g01417 408 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 48 114 IPR000504 GO:0003723
Bach2g01417 408 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 240 327 - -
Bach2g01417 408 SUPERFAMILY RNA-binding domain, RBD 124 215 IPR035979 GO:0003676
Bach2g01417 408 Gene3D - 129 231 IPR012677 -
Bach2g01417 408 CDD RRM2_PUB1 131 209 - -
Bach2g01417 408 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 131 209 IPR000504 GO:0003723
Bach2g01417 408 SUPERFAMILY RNA-binding domain, RBD 35 124 IPR035979 GO:0003676
Bach2g01417 408 Gene3D - 1 128 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach2g01417 Bach-Chr2 23352587 23356805 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach2g01417 38 327 Eukaryotic Initiation Factors Gene Family AT1G49760 28.808 9.69e-28 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach2g01417 K13201 - cave:132165902 697.967