LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bach2g00896	ATGAATCATCATCGCTGTGTGAATGAATTTCCTGGTTCAAGTTCGTCTCTTTCTGGAGGGCAGCACCACGTGCTTCCTCCTCAACCAATGCAAGGACTTCACGAAAGTAGCCCTCCGCCATTTCTCACCAAAACTTACGACATCGTTGAAGAACTTTCCACAAATCATATAATCTCCTGGAGCAAAGGGAACAACAGCTTCGTCGTGTGGGACCCCCAGGCCTTCTCCTTGAGTCTTCTTCCCCGATACTTCAAGCACAATAATTTCTCTAGCTTTGTCAGGCAGCTCAATACATATGGGTTTAGAAAGGTTGATCCAGATAGATGGGAGTTTGCTAATGAAGGGTTTTTGAGAGGGCAAAGGCATCTTTTGAAGAATATTAGGAGAAGGAAGGCTCCTCAAGCTCAGTCTTCGCAGCAAGCACTAGACTCTTGTGTTGAAGTGGGACGGTTTGGATTAGATGGAGAAGTTGATCGGTTAAGGCGTGACAAGCAGGTTCTAATGGTGGAGCTAGTGAAACTTAGACAACAACAGCAGAATACAAGAAGTTACCTTCAAGCAATGGAAGCAAGGCTTAAGAAGACTGAGCAGAAGCAGCAACAGATGATGAACTTCTTGGCCAGAGCAATGCAGAACCCCAACTTCATGCAACAATTGGTTCAACAAAAGGAAGTGCGAAAAGAGCTGGCGGAAGCTTTCTCAAAGAAGAGAAGACGACCAATTGATCAAGGGCCTAGTAGTAATGTAGAAGTAGAGGAACTAGGCCATAATCAACAGTGCTCAGCTTTTGTGAAACTTGAACCGCAGGTATACACTGACATATCAGAGTTTGAAGTTTCAGACCTGGATCTTGTTATGAACATGGAGAGATCACAGAGTGGAAGCCAACCACACCTAGAGGAAGAATACAACGAGAAAGTAAGCAGAGATAAAGGCATTGATGAAGTATTTTGGGAAGATTTATTGAATGAAGGTATTGAAGAAGACATACTAGGTTTTGAAGAAGACGAGGAAGATGTGGATGTTTTGGCTGAGCAACTTGGTTATTTGGCCTCCAGTCGTAAATAG	1068	0.4373	MNHHRCVNEFPGSSSSLSGGQHHVLPPQPMQGLHESSPPPFLTKTYDIVEELSTNHIISWSKGNNSFVVWDPQAFSLSLLPRYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQRHLLKNIRRRKAPQAQSSQQALDSCVEVGRFGLDGEVDRLRRDKQVLMVELVKLRQQQQNTRSYLQAMEARLKKTEQKQQQMMNFLARAMQNPNFMQQLVQQKEVRKELAEAFSKKRRRPIDQGPSSNVEVEELGHNQQCSAFVKLEPQVYTDISEFEVSDLDLVMNMERSQSGSQPHLEEEYNEKVSRDKGIDEVFWEDLLNEGIEEDILGFEEDEEDVDVLAEQLGYLASSRK	355

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bach2g00896	355	Coils	Coil	157	205	-	-
	Bach2g00896	355	MobiDBLite	consensus disorder prediction	1	37	-	-
	Bach2g00896	355	ProSitePatterns	HSF-type DNA-binding domain signature.	80	104	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Bach2g00896	355	SMART	hsfneu3	37	130	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Bach2g00896	355	PRINTS	Heat shock factor (HSF) domain signature	41	64	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Bach2g00896	355	PRINTS	Heat shock factor (HSF) domain signature	79	91	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Bach2g00896	355	PRINTS	Heat shock factor (HSF) domain signature	92	104	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Bach2g00896	355	Pfam	HSF-type DNA-binding	41	130	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Bach2g00896	355	SUPERFAMILY	"Winged helix" DNA-binding domain	36	130	IPR036390	-
	Bach2g00896	355	MobiDBLite	consensus disorder prediction	7	22	-	-
	Bach2g00896	355	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	27	259	IPR027725	-
	Bach2g00896	355	Gene3D	-	33	131	IPR036388	-
	Bach2g00896	355	FunFam	Heat shock transcription factor 1	34	131	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bach2g00896	Bach-Chr2	18713837	18715496	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bach2g00896	27	353	HSF	AT3G22830	59.889	7.83e-139	399

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Bach2g00896		HSF_DNA-bind	6e-32	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bach2g00896	K09419		-	qsu:112016413	476.478