Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach2g00463 ATGTCGCGTTACAGAGGGCCTCGTTTCAAAAAAATACGCCGTCTGGGAGCTTTACCGGGACTAACTAGTAAAAGGCCTAGAGACGGAAGCGATCTTAGAAAACAATCGCGCTCCGGTAAAAAATCTCAATACCGTATTCGTTTAGAAGAAAAACAAAAATTGCGTTTTCATTATGGTCTTTCAGAACGACAATTGCTTAAATACGTTCGTATCGCCAGAAAAGCTAAAGGGGCAAGTGGTCAGGTTTTACTACAATTACTTGAAATGCGTTTGGATAACATACTTTTTCGATTGGGTATGGCTTTGACTATTCCTCAAGCCCGCCAATTAGTTAACCATAGACATGTTTTAGTTAATGGTCGTATAGTAGATATACCAAGTTATCGCTGCAAATCCCAAGATATTATTACAACGAGGGATGAACAAAAGTCTCGAGCTCTGATTCAAAATTGTCTTGATTCATCCCCCCGTGAGGAATTACCAAAACATTTGACTCTTTACCCATTCCAATATAAAGAATTAGTCAATCAAATAATAGATAGTAAATGGGTTGGTTTGAAAATCAATGAATTGCTAGTTGTAGAATATTATTCTCGTCGGACTTAA 606 0.3762 MSRYRGPRFKKIRRLGALPGLTSKRPRDGSDLRKQSRSGKKSQYRIRLEEKQKLRFHYGLSERQLLKYVRIARKAKGASGQVLLQLLEMRLDNILFRLGMALTIPQARQLVNHRHVLVNGRIVDIPSYRCKSQDIITTRDEQKSRALIQNCLDSSPREELPKHLTLYPFQYKELVNQIIDSKWVGLKINELLVVEYYSRRT 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach2g00463 201 ProSiteProfiles S4 RNA-binding domain profile. 89 149 - -
Bach2g00463 201 Pfam S4 domain 89 136 IPR002942 GO:0003723
Bach2g00463 201 MobiDBLite consensus disorder prediction 1 44 - -
Bach2g00463 201 Hamap 30S ribosomal protein S4 [rpsD]. 1 199 IPR005709 GO:0003735|GO:0006412|GO:0015935
Bach2g00463 201 SMART Ribosomal_S4_2 3 88 IPR001912 GO:0019843
Bach2g00463 201 MobiDBLite consensus disorder prediction 26 44 - -
Bach2g00463 201 Gene3D - 88 184 IPR036986 GO:0003723
Bach2g00463 201 Gene3D Ribosomal Protein S4 Delta 41; Chain A, domain 1 3 199 - -
Bach2g00463 201 PANTHER 30S 40S RIBOSOMAL PROTEIN 27 150 IPR022801 GO:0003735|GO:0015935|GO:0019843
Bach2g00463 201 Pfam Ribosomal protein S4/S9 N-terminal domain 3 88 IPR001912 GO:0019843
Bach2g00463 201 NCBIfam 30S ribosomal protein S4 3 199 IPR005709 GO:0003735|GO:0006412|GO:0015935
Bach2g00463 201 CDD S4 89 148 - -
Bach2g00463 201 SMART s4_6 89 153 IPR002942 GO:0003723
Bach2g00463 201 FunFam 30S ribosomal protein S4, chloroplastic 88 184 - -
Bach2g00463 201 SUPERFAMILY Alpha-L RNA-binding motif 3 199 - -
Bach2g00463 201 FunFam 30S ribosomal protein S4, chloroplastic 3 98 - -
Bach2g00463 201 ProSitePatterns Ribosomal protein S4 signature. 87 111 IPR018079 GO:0019843
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach2g00463 Bach-Chr2 10047022 10047627 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach2g00463 85 133 Cytoplasmic Ribosomal Protein Gene Family AT5G39850 45.098 2.78e-06 44.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach2g00463 K02986 - qsa:O6P43_035162 364.77