LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bach2g00277	ATGAGTTTCGTTGTAACCTTGGGCTACGGGTTCTTTCCAATTCTCTGCAAAAACTTTCTGGAGTGTCTGCCGAAGTCACTCGCTTGCTTCCTCCTCCGTTCTAGGTTTTCTCTGCAAGCCTACTGCAGATTCCTCCGCTGTTCGCTGATACACTTTCCTGGGACACTCCAAAAAATGGCTAACACTATGGCTAGGTCGTTTCTGCAAGTGGCAGCGACGGAGGAGACTGTAACGCCTCTAAGAGTGGTACAGATAGAGGGACTGGTCATCCTGAAGATAATCAAACACTGTAAGGACCACTCACCTGCTTTAGTCACTGGACAACTTCTGGGGCTGGATGTTGGCAGTGTTCTTGAAGTTACGAACTGTTTCCCTTTTCCGATTAGGGAGGAGGATGAGGAAATTGAAGCTGATGGTGCTAATTACCAGCTTGAAATGATGAGATGCTTGAGGGAGGTTAATGTTGACAATAATACCGTTGGATGGTACCAGTCTACATTGCTAGGTTCCTTTCAGACTGTGGAGCTGATAGAAACCTTCATGAATTACCAGGAGAACATTAGACGTTGTGTTTGCATAATATATGATCCGTCAAGGTCTGATCAAGGTGTCCTAGCTCTGAAGGCCTTGAAGCTTTCTGATTCATTTATGGAACTCTATAAAAGCAACAACTTCACTGGAGAGAAATTGAGGGAGAAGAACTTATCATGGGTGGATATATTTGAGGAGATACCTATCAAAGTTTCAAATTCTGCCCTTGTCAGTGCATTCATGACAGAGCTTGAACCAGATACACCAGTCAGCCAGTGTGATTATGATCGCCTGCAATTGTCAACCAGTTCATTAATGGAGAGGAATGTGGAATTTTTGATCGAGTGTATGGATGATTTGTCACTTGAACAACAGAAGTTCCAATACTACTACCGGAGCTTGTCCAGGCAGCAGGCCCAGCAACAAGCATGGCTTCAGAAGAGAAGGACGGAGAACATGGCACGTAAAACTGCTGGAGAGGACCCTTTGCCCGAGGAAGATCCTTCAAACCCCATTTTCAAGCCAATCCCTGAGCCATCACGGTTGGACAGCTTCCTCATAACAAATCAAATTTCCAACTACTGCAACCAAATTAATGGGGTGTCAGGGCAAAGTTTTAACAGACTTTATTTGATGAAGGCACTGCATGAGGATTCATAAGCCAATTCTGATTCTGTCCTGTTGTAAGCTTTTGATTCGGTTGTTTTTCTTGTAGGATGGAAAATTATGGTTGAGGTTAATAGTATATTAGATGATGCTTCAAGGCGATGCATTTTGCTTGTTTCTTTTCCATTTTCGAACCCAACAAATGTCACCACCGTATACCCACCCGTTCTTCAGTGTCCTGTTGTTCTGGTATCTTTTATTGTATTAATTTTTTTTTTT	1416	0.4322	MSFVVTLGYGFFPILCKNFLECLPKSLACFLLRSRFSLQAYCRFLRCSLIHFPGTLQKMANTMARSFLQVAATEETVTPLRVVQIEGLVILKIIKHCKDHSPALVTGQLLGLDVGSVLEVTNCFPFPIREEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTLLGSFQTVELIETFMNYQENIRRCVCIIYDPSRSDQGVLALKALKLSDSFMELYKSNNFTGEKLREKNLSWVDIFEEIPIKVSNSALVSAFMTELEPDTPVSQCDYDRLQLSTSSLMERNVEFLIECMDDLSLEQQKFQYYYRSLSRQQAQQQAWLQKRRTENMARKTAGEDPLPEEDPSNPIFKPIPEPSRLDSFLITNQISNYCNQINGVSGQSFNRLYLMKALHEDS	396

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bach2g00277	396	Hamap	Eukaryotic translation initiation factor 3 subunit H [EIF3H].	78	395	IPR027524	GO:0003743\|GO:0005737\|GO:0005852
	Bach2g00277	396	MobiDBLite	consensus disorder prediction	324	352	-	-
	Bach2g00277	396	FunFam	Eukaryotic translation initiation factor 3 subunit H	62	271	-	-
	Bach2g00277	396	ProSiteProfiles	MPN domain profile.	83	216	IPR037518	-
	Bach2g00277	396	Pfam	C-terminal region of eIF3h	202	394	IPR045810	-
	Bach2g00277	396	Pfam	JAB1/Mov34/MPN/PAD-1 ubiquitin protease	81	184	IPR000555	GO:0005515\|GO:0008233\|GO:0008237
	Bach2g00277	396	CDD	MPN_eIF3h	81	344	IPR027524	GO:0003743\|GO:0005737\|GO:0005852
	Bach2g00277	396	MobiDBLite	consensus disorder prediction	326	340	-	-
	Bach2g00277	396	Gene3D	Cytidine Deaminase, domain 2	54	272	-	-
	Bach2g00277	396	SMART	pad1_6	82	215	IPR000555	GO:0005515\|GO:0008233\|GO:0008237
	Bach2g00277	396	PANTHER	EUKARYOTIC TRANSLATION INITIATION FACTOR 3 -RELATED	74	379	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bach2g00277	Bach-Chr2	3892267	3898689	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bach2g00277	146	395	Eukaryotic Initiation Factors Gene Family	AT1G10840	85.200	3.00e-157	441

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bach2g00277	K03247		-	gmx:100814297	625.935