LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bach2g00276	GCTCGCTCCCTCCTCCGGTCTAGGGTTTTTTTGCAAGCGTACGGCAGATACCTCAGCTGTATGCCCATACGCTTTTGTGGGATACTCCGAAAAATGGCTAATACTATGGCTAGGTCGTTTCTGCAAGTGGCAGCGACGGAGGAGACTGTAACTCCTCTCAGAGTGGTACAGATAGAGGGACTGGTCATCCTAAAGATAATCAAACACTGTAAGGACCACTCACCTGCTTTAGTCACTGGACAACTTCTGGGGCTGGATGTTGGCAGTGTGCTTGAAGTTACGAACTGTTTCCCCTTTCCGATTAGGGAGGAGGATGAGGAAATTGAAGCTGATGGTGCTAATTACCAGCTTGAAATGATGAGATGTTTGAGGGAGGTTAATGTTGACAATAACACTGTTGGATGGTACCAGTCTACATTGCTAGGTTCCTTTCAGACTGTGGAGCTGATTGAAACCTTCATGAATTACCAGGAGAACATTAGACGTTGTGTTTGCATAATATATGATCCGTCAAGGTCTGATCAAGGTGTCCTAGCTCTGAAGGCCTTGAAGCTTTCGGATTCTTTTATGGAACTCTATAAAAGCAACAACTTCACTGGAGAGAAATTGAGGGAGAAGAACTTATCATGGGTGGATATATTTGAGGAGATACCTATCAAAGTTTCAAATTCTGCCCTTATCAGTGCATTCATGACAGAGCTTGAACCAGATACACCAGTCAGCCAGTGTGATTATGATCGCCTGCAATTGTCAACCAGTTCATTAATGGAGAGGAATGTGGAATTTTTGATCGAGTGTATGGATGATTTGTCACTTGAACAACAGAAGTTCCAATACTACTACCGGAGCTTGTCCAGGCAGCAGGCTCAGCAACAAGCATGGCTTCAGAAGAGAAGGACGGAGAACATGACACGTAAAACTGCTGGAGAGGACCCTTTGCCCGAGGAAGATCCTTCAAACCCCATTTTCAAGCCAATCCCTGAGCCATCACGGTTGGACAGCTTCCTCATAACAAATCAAATTTCCAACTACTGCAACCAAATTAATGGGGTGTCAGGGCAAAGTTTTAACAGACTTTATTTGATGAAGGCACTGCATGAGGATTCATAA	1110	0.445	MARSFLQVAATEETVTPLRVVQIEGLVILKIIKHCKDHSPALVTGQLLGLDVGSVLEVTNCFPFPIREEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTLLGSFQTVELIETFMNYQENIRRCVCIIYDPSRSDQGVLALKALKLSDSFMELYKSNNFTGEKLREKNLSWVDIFEEIPIKVSNSALISAFMTELEPDTPVSQCDYDRLQLSTSSLMERNVEFLIECMDDLSLEQQKFQYYYRSLSRQQAQQQAWLQKRRTENMTRKTAGEDPLPEEDPSNPIFKPIPEPSRLDSFLITNQISNYCNQINGVSGQSFNRLYLMKALHEDS	334

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bach2g00276	334	Pfam	C-terminal region of eIF3h	140	332	IPR045810	-
	Bach2g00276	334	PANTHER	EUKARYOTIC TRANSLATION INITIATION FACTOR 3 -RELATED	14	317	-	-
	Bach2g00276	334	Hamap	Eukaryotic translation initiation factor 3 subunit H [EIF3H].	16	333	IPR027524	GO:0003743\|GO:0005737\|GO:0005852
	Bach2g00276	334	CDD	MPN_eIF3h	19	282	IPR027524	GO:0003743\|GO:0005737\|GO:0005852
	Bach2g00276	334	ProSiteProfiles	MPN domain profile.	21	154	IPR037518	-
	Bach2g00276	334	MobiDBLite	consensus disorder prediction	264	278	-	-
	Bach2g00276	334	MobiDBLite	consensus disorder prediction	260	290	-	-
	Bach2g00276	334	FunFam	Eukaryotic translation initiation factor 3 subunit H	1	209	-	-
	Bach2g00276	334	Pfam	JAB1/Mov34/MPN/PAD-1 ubiquitin protease	19	122	IPR000555	GO:0005515\|GO:0008233\|GO:0008237
	Bach2g00276	334	SMART	pad1_6	20	153	IPR000555	GO:0005515\|GO:0008233\|GO:0008237
	Bach2g00276	334	Gene3D	Cytidine Deaminase, domain 2	2	210	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bach2g00276	Bach-Chr2	3878551	3884743	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bach2g00276	84	333	Eukaryotic Initiation Factors Gene Family	AT1G10840	84.400	5.58e-158	440

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bach2g00276	K03247		-	gmx:100814297	620.157