LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bach2g00215	ATGGACGGAGCTTTACTCTCGACCGCCGACGGCGGAAGCGGCGGCAGTGGAGGTCCGGCACCCTTCCTTCTGAAGACCTACGACATGGTGGACGATTCAACCACCAATGATATTGTCTCATGGAGCTCCTCCCAGAACAGCTTCGTCGTGTGGAACCCGCCGGAGTTCGCCCGTCTTCTGCTTCCGGTGTATTTCAAGCACAACAACTTCTCCAGCTTCATCCGCCAGCTAAATACTTATGGATTTAGAAAAATAGATCCAGAGCAATGGGAGTTTGCTAATGAAGATTTTATGAAAGATCAAAAGCATCTCCTTAAGAATATTCATCGCAGGAAGCCTATCCACAGTCACAGTCATCCTCCAGCTTCTCTTGTGGATGAGGAAAGGGCAGCATATGAGGAAGAAATTCAGAAACTTTCACGTGAAAAAACTTCTCTTGAATCTGATATTCTTAAATTCAAACAACTTGAGTCATCTGCAAAGCATCAGGTGGATTATGCACTACAGCGGTTAGAAGGAATGGAGAAAAGGCAGAAGACTTTGCTGAACTTCTTTGAGAAGGCTCTTCAGAGTCCTACTTTTATTGAACAACTTTCACAGAAAATTGAGTCCATGGATTTATCGGCATATAATAAAAAAAGGCGATTGCCACAGGTTGATCATTCAAAGACAGTTGCCGAATGTAGCTTTGTTGACGATCATAGTAATTATAGACCTGAATTTGGGAATGTTTTCCACCAAGATTTCTCAAATAAACTCAGATTGGAATTATCACCAGCTGTTTCAGATATTAACTTGCTATCACATAGCACAGAGAGCTCGAATGAAGACCGGGCAAGTCCACAGAAGAAGCATTCTGAAGAAGAACCAAAAGGACTTCAGCCATGGACTACTCTCGCATTTGCACCTGAAACATTAGAGCTTGCAGATACTGGAGCATCTCTTACCTTTAAAATGGATTCTTCTTTATCACGAATATCAACAATCACTGTGGGCCCAAAACTGCATTCTTTGCAGCCAAGTAATGAAGAAGGTGACAGTCCTATGTCCTGCCTTCTAAATTTAACTCTGGCATCTTGTCCGTTTCAAGTCAACCGAAATTCATACTCTGCCAGATCACCCCAAATAGACTGTCAGGAAATTGGCAAATTGACAGAATCAGGAATTTTTGCCAGTGGAAAAGAATCTGATAGTGGAGTTACTTTAAACAGATACCTAGCCAATGAGTTTACCAAGGCTTCTTTCCAGGAGGACCCAAGTAACAGCCATGTGACCCCAGCTGCCCCAGCTAGAGTAAATGATCTATTCTGGGAACAGTTCCTTACTGAAAGACCAGGCTGTTCAGTCAATGAAGAGGCAATTTCCAACTACAGGGTAAATCCATTTGAGGAGCAAGATGAAAGCAGGTCATGTCTTGGAACCCCTGGAAATTTTACTAATATGGATCAACTCAAACTGTAA	1461	0.4278	MDGALLSTADGGSGGSGGPAPFLLKTYDMVDDSTTNDIVSWSSSQNSFVVWNPPEFARLLLPVYFKHNNFSSFIRQLNTYGFRKIDPEQWEFANEDFMKDQKHLLKNIHRRKPIHSHSHPPASLVDEERAAYEEEIQKLSREKTSLESDILKFKQLESSAKHQVDYALQRLEGMEKRQKTLLNFFEKALQSPTFIEQLSQKIESMDLSAYNKKRRLPQVDHSKTVAECSFVDDHSNYRPEFGNVFHQDFSNKLRLELSPAVSDINLLSHSTESSNEDRASPQKKHSEEEPKGLQPWTTLAFAPETLELADTGASLTFKMDSSLSRISTITVGPKLHSLQPSNEEGDSPMSCLLNLTLASCPFQVNRNSYSARSPQIDCQEIGKLTESGIFASGKESDSGVTLNRYLANEFTKASFQEDPSNSHVTPAAPARVNDLFWEQFLTERPGCSVNEEAISNYRVNPFEEQDESRSCLGTPGNFTNMDQLKL	486

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bach2g00215	486	Coils	Coil	122	156	-	-
	Bach2g00215	486	Gene3D	-	17	112	IPR036388	-
	Bach2g00215	486	MobiDBLite	consensus disorder prediction	276	291	-	-
	Bach2g00215	486	FunFam	Heat shock transcription factor 1	15	112	-	-
	Bach2g00215	486	SMART	hsfneu3	18	111	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Bach2g00215	486	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	14	273	IPR027725	-
	Bach2g00215	486	Pfam	HSF-type DNA-binding	22	111	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Bach2g00215	486	MobiDBLite	consensus disorder prediction	269	294	-	-
	Bach2g00215	486	ProSitePatterns	HSF-type DNA-binding domain signature.	61	85	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Bach2g00215	486	PRINTS	Heat shock factor (HSF) domain signature	22	45	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Bach2g00215	486	PRINTS	Heat shock factor (HSF) domain signature	60	72	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Bach2g00215	486	PRINTS	Heat shock factor (HSF) domain signature	73	85	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Bach2g00215	486	SUPERFAMILY	"Winged helix" DNA-binding domain	18	111	IPR036390	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bach2g00215	Bach-Chr2	2748482	2754087	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bach2g00215	22	486	HSF	AT4G13980	53.961	1.81e-158	456

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Bach2g00215		HSF_DNA-bind	1.1e-30	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bach2g00215	K09419		-	gmx:100816484	713.761