Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach2g00052 ATGGAATTCGACGAGTACGATTACTTAGAGAAGACAGTGGAGGAGATGGAAGATCGAGATTCGACAAAGAAGAAGAAGGAGAGCAGTGACAGGAGTGAAAGAAGTTACAGGAAGCGTGAGGTCGACGAGGATCTGGATGGTGAAGACAGGAAGAGCAAGAGGTCCAGAGGCGACGATGAGAATGGAACAAGGAAGGATCGTGATGACCGTGACAGAGAACGATCTAGCCGTGAGAAGGAGCGGCAGCATAGGAGTGGTAGGGAGAGGGACGAAGAAAGAGAGCGAGAGAGAAGCAGTAAGGAGAAGGAAAGGGACAGAGACAGAGACAGGGATAGAGATAGAGATAGGGAGAAGGATAGGGAGAAAGAGAGGGATAAGGATAGGGAGAGGGATAAAGAAAGAAGGGATAAGGAGAGGGAGCGGGAGAAAGAAAGAGAGAGGGAGAAGAGAGAGAGGGACAGGGAGAGGGAAAGAGAGCGGGAGAGAAGGGAGAGGGAGAGGGCTATGGAGGAGAAAGAGAGGTCCAGGAGGAGCAGAAGTCGATCCGATCGAGATAGAGACAGAGAGCGAGAATTAGACTTGAGAGATAGCAGGAGATTTAGGGAAAAGAAAGATGCTGTGGAACCGGAGGCAGATCCAGAAAGGGATCAGAGAACTGTTTTTGCTTACCAGATGCCCTTAAAGGCAACAGAGAGAGATGTTTATGAATTCTTCTCAAAAGCTGGCAAGGTGAGGGATGTGCGTCTGATCATGGATAGGAACTCAAGACGGTCAAAAGGAGTTGGCATTGCGATAATGATGAGGGATGATGGGAATACCTTGCACTCATGTTTAATCAATTCATGCTGCGTACTCAAGGTAGATGACATAATCCTGGTTTTACTTTTTGGTCCTTTTCCCATTTTTCTTCCTCTACGTTTGCCATACGATACATCAAAAGAAACTCAGCTTGAGCTGTCTGCACTAGAGTTTTTGTTTCCCTTCATCTCTTTGCTGTATGATTTGTATATTGAATTTTTTGATGCAATGTCTGTGCCAATGGCAATTGCTCTCTCTGGCCAACTGCTTCTTGGACAGCCTGTAATGGTTAAACCTTCTGAGGCTGAAAAGAACCTTGTTCAATCTAATGCTTCCAGTGGAGGTGCTGGTGTTACAGGACCATATGGAGCAGTTGATAGAAAATTATATGTGGGGAATCTTCACTTCAACATGACTGAAAGCCAGTTGAGAGAGATTTTTGAGCCATTTGGTCCGGTGGAGCTTGTGCAACTGCCTCTTGACCTGGAGACAGGACATTGCAAGGGTTTTGGTTTTGTTCAATTTGCCCATCTTGAACACGCCAAGGCAGCACAGAGTTTGAATGGGAAATTAGAGATTGCTGGCCGAACAATCAAGGTTTCGTCTGTAACAGATCATGTTGGAACCCAAGATGCAACTGCTAAATCTGCAGACTTTGATGATGATGAAGGTGGATTGGCTTTAAATGCCCAATCAAGAGCATTGCTCATGCAAAAGCTGGATCGGTCTGGTATTGCCTCAAGCATTGCAGGGTCTATTGGGGTGCCCACTGCAAATGGGTCAGCTCCTGCTCAACAGGCTGTTAGCATGCCTTTTGGTGGTCCAGGTCTAATACATGCACCTGCTCTCCCAACGCAAATTATGTCTACCCCGGTGGCAGAACCAGTAGGAAGCCCCAGCGAGTGCTTACTCTTGAAGAATATGTTTGATCCAGTGACTGAGACGGAACCAGATTTTGATGTAGACATTAAAGAGGATGTAGAGGAAGAATGCTCCAAGTTTGGCCGGGTGAAGCATATTTATGTTGACAAAAGAAGTGCTGGTTTTGTCTATTTGAGGTTTGAAACAGTGGAAGCTGCAAGTGCTGCTCAACGTTCAATGCACCTGAGATGGTTTGCGCGCAGGTTGATTTCAGCTGTCTACATGCAACCGCAGGTATATGAAGCCAAGTTTAAAGGAGAAGCATGATCAAGTTCTTAGGGGTACGGCATCAGCCTTTGAAGATGGCACAGCCTGCAATTTTTTTTTTTAAAATTAATTTGCTCAATTTAAGTTTAGTTTATAATTTTGACCCGTGAATTGTAGTCTGTATGAATACGGATTCCCTGCTGTGTAGATGGATATCTTTATGATCTTATTACCAGTTGTGCATTTGAAT 2176 0.4527 MEFDEYDYLEKTVEEMEDRDSTKKKKESSDRSERSYRKREVDEDLDGEDRKSKRSRGDDENGTRKDRDDRDRERSSREKERQHRSGRERDEERERERSSKEKERDRDRDRDRDRDREKDREKERDKDRERDKERRDKEREREKEREREKRERDRERERERERRERERAMEEKERSRRSRSRSDRDRDRERELDLRDSRRFREKKDAVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGIAIMMRDDGNTLHSCLINSCCVLKVDDIILVLLFGPFPIFLPLRLPYDTSKETQLELSALEFLFPFISLLYDLYIEFFDAMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNASSGGAGVTGPYGAVDRKLYVGNLHFNMTESQLREIFEPFGPVELVQLPLDLETGHCKGFGFVQFAHLEHAKAAQSLNGKLEIAGRTIKVSSVTDHVGTQDATAKSADFDDDEGGLALNAQSRALLMQKLDRSGIASSIAGSIGVPTANGSAPAQQAVSMPFGGPGLIHAPALPTQIMSTPVAEPVGSPSECLLLKNMFDPVTETEPDFDVDIKEDVEEECSKFGRVKHIYVDKRSAGFVYLRFETVEAASAAQRSMHLRWFARRLISAVYMQPQVYEAKFKGEA 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach2g00052 661 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 113 657 IPR006509 GO:0003723|GO:0005634|GO:0006397
Bach2g00052 661 NCBIfam splicing factor, CC1-like family 336 657 IPR006509 GO:0003723|GO:0005634|GO:0006397
Bach2g00052 661 SMART rrm1_1 219 282 IPR000504 GO:0003723
Bach2g00052 661 SMART rrm1_1 394 467 IPR000504 GO:0003723
Bach2g00052 661 SMART rrm1_1 568 645 IPR000504 GO:0003723
Bach2g00052 661 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 218 263 IPR000504 GO:0003723
Bach2g00052 661 FunFam Splicing factor, CC1-like protein 562 661 - -
Bach2g00052 661 CDD RRM2_RBM23_RBM39 395 472 - -
Bach2g00052 661 CDD RRM3_RBM39_like 566 648 - -
Bach2g00052 661 FunFam Splicing factor CC1-like 375 482 - -
Bach2g00052 661 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 395 465 IPR000504 GO:0003723
Bach2g00052 661 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 225 263 IPR000504 GO:0003723
Bach2g00052 661 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 590 642 IPR000504 GO:0003723
Bach2g00052 661 SUPERFAMILY RNA-binding domain, RBD 210 266 IPR035979 GO:0003676
Bach2g00052 661 Coils Coil 134 178 - -
Bach2g00052 661 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 486 585 IPR029123 -
Bach2g00052 661 SUPERFAMILY RNA-binding domain, RBD 393 650 IPR035979 GO:0003676
Bach2g00052 661 Gene3D - 211 378 IPR012677 -
Bach2g00052 661 MobiDBLite consensus disorder prediction 1 188 - -
Bach2g00052 661 MobiDBLite consensus disorder prediction 12 188 - -
Bach2g00052 661 Gene3D - 563 660 IPR012677 -
Bach2g00052 661 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 393 471 IPR000504 GO:0003723
Bach2g00052 661 Gene3D - 389 485 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach2g00052 Bach-Chr2 630184 635630 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach2g00052 365 466 Eukaryotic Initiation Factors Gene Family AT4G34110 36.893 1.00e-08 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach2g00052 K13091 - gmx:100802446 555.829
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bach2g00052 2 630184 635630 Bach2g00052 2 630184 635630 ECH