LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bach1g03194	TTAGCTTAGTTTCTGTCCAGTGGAATATATACTTACGACCTCAATAGTACTTTCAGAATGAGTAGGCGCTCAAGTCGCACTATATATGTTGGCAATCTTCCTGGTGATATTCGCTTGAGAGAAGTGGAAGATCTGTTCTACAAGTATGGTCCAATCGTTGACATTGATTTGAAAATCCCTCCTAGACCACCGGGTTATGCTTTTGTGGAGTTTGAGGATCCTCGTGATGCTGAAGATGCAATTCGTTATCGAGATGGATATACTTTTGATGGTTTTCGATTACGAGTTGAACTTGCACATGGTGGACGGGGATATTCATCATCAGTAGACCGCTATAGTAGCTATAGTGGTGGTGGTGGAAGCCGTGGACCTTCCAGGCGTTCGGACTATCGCGTTCTGGTCACTGGATTACCTCCTTCAGCTTCATGGCAAGACCTAAAGGATCACATGCGTAAAGCTGGTGATGTATGCTTCTCTCAAGTCTTCCGTGAACGTGGTGGCATGACAGGGATTGTGGATTATACCAACTATGAAGATATGAAATATGCTATCAGGAAACTAGATGACTCAGAATTCCGGAATGCCTTTTCTCGGGCATATATACGGGTACGGAAGTATGATCGACGGAGTTATTCAAGGAGTCCTAGTCATGATTCAAGGAGCTATTCTAGGAGTCGTAGCCGCAGTCCATATATGTTGCAGAGTCGGAGTCGAAGCCACAGTCGAAGCCGAAGTCTTAGCTATAGTGGCAGGAGCAGAAGTTTCTCTCCTATGGCAAAACATTTGAGACCTTCAGTATCCCCCTCAAGATTGGCTTTTTGCGGCGACCTGGGGACTGCATATCCCGATCGAGATCCAGGTCTCCAAATTTATCTCCACTGCCTCGCAAAAGTCGCAGTCCTAGCCGAAGTCCGAGAAGCTTATCACCATCCCGTTCGCCTTCAGCCAACGTTGACCGAAGCAGATCTACTGATTCTGGAGATCGTTATTGAGCATGTTTTTCTGAAATGCTTTGTTAAATTTTACAGGTGGAACATTAGGAACCGAGATACTAATTAG	1059	0.4533	MSRRSSRTIYVGNLPGDIRLREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDPRDAEDAIRYRDGYTFDGFRLRVELAHGGRGYSSSVDRYSSYSGGGGSRGPSRRSDYRVLVTGLPPSASWQDLKDHMRKAGDVCFSQVFRERGGMTGIVDYTNYEDMKYAIRKLDDSEFRNAFSRAYIRVRKYDRRSYSRSPSHDSRSYSRSRSRSPYMLQSRSRSHSRSRSLSYSGRSRSFSPMAKHLRPSVSPSRLAFCGDLGTAYPDRDPGLQIYLHCLAKVAVLAEVREAYHHPVRLQPTLTEADLLILEIVIEHVFLKCFVKFYRWNIRNRDTN	333

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bach1g03194	333	SMART	rrm1_1	8	78	IPR000504	GO:0003723
	Bach1g03194	333	SMART	rrm1_1	112	181	IPR000504	GO:0003723
	Bach1g03194	333	FunFam	ASF/SF2-like pre-mRNA splicing factor SRP31	1	110	-	-
	Bach1g03194	333	SUPERFAMILY	RNA-binding domain, RBD	5	180	IPR035979	GO:0003676
	Bach1g03194	333	CDD	RRM2_SF2_plant_like	111	186	-	-
	Bach1g03194	333	MobiDBLite	consensus disorder prediction	191	243	-	-
	Bach1g03194	333	FunFam	serine/arginine-rich splicing factor SR34A-like	111	188	-	-
	Bach1g03194	333	MobiDBLite	consensus disorder prediction	206	235	-	-
	Bach1g03194	333	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	7	82	IPR000504	GO:0003723
	Bach1g03194	333	Gene3D	-	112	188	IPR012677	-
	Bach1g03194	333	CDD	RRM1_SF2_plant_like	8	79	-	-
	Bach1g03194	333	Gene3D	-	2	111	IPR012677	-
	Bach1g03194	333	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	9	76	IPR000504	GO:0003723
	Bach1g03194	333	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	113	175	IPR000504	GO:0003723
	Bach1g03194	333	MobiDBLite	consensus disorder prediction	85	109	-	-
	Bach1g03194	333	MobiDBLite	consensus disorder prediction	191	205	-	-
	Bach1g03194	333	PANTHER	RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN	5	227	-	-
	Bach1g03194	333	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	111	189	IPR000504	GO:0003723
	Bach1g03194	333	MobiDBLite	consensus disorder prediction	88	102	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bach1g03194	Bach-Chr1	41220118	41225473	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bach1g03194	8	169	Eukaryotic Initiation Factors Gene Family	AT1G71770	24.551	3.58e-06	46.6

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bach1g03194	K12890		-	gmx:100794282	339.347