LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bach1g03087	ATGGGTAGTCATAGTCAAGATGGATCAAAGGTTCAAAGGCCAAATGTGATACGTGGCAGTAACAGATCGCTGCTTGGTTACTCCCATGTTCCAATTTTATGCTGGACCTCTAAAACATTGGCATCAAGAACTCATTATGCCTCACGTTTTTCTTCCATACACCAATCTAAAACAAAATCAGTCTCATATAGGAGAATGGCATGTGTCAATGCTATGGAAAATGTTGTAGAGCTGCAGGCCAAAGTGACGAGCAAGTGTTTCTTTGATGTAGAAATTGGGGGTGAACCTGCAGGCAGGATTGTATTGGGTCTATTTGGAGAGGTTGTTCCTAGAACCGTAGAAAATTTCCGCGCACTCTGCACAGGAGAAAAAGGATATGGTTACAAAGGTTGTTCCCTCCATCGTATAATCAAAGATTTTATGATTCAGGGAGGAGATTTCACTGAAGGAAATGGAACTGGAGGGATCAGCATTTATGGTTCTAGTTTCGAAGATGAGAATTTTTCCTTGAAGCATGTTGGTCCAGGAGTCTTGAGTATGGCAAATGCAGGCCCTAATACCAATGGTAGTCAATTTTTCATATGTACCGTAAAGACTCCATGGCTAGACAATCGCCATGTCGTGTTTGGACATGTCATTGATGGAATGGATGTTGTGGAGATGCTTGAATCCCAGGAGACAAACAGGATGGATAGCCCTCGGAAGACGTGCAGAGTTGTTGATTGTGGGGAACTACCGTTGGATGGCTGA	750	0.4307	MGSHSQDGSKVQRPNVIRGSNRSLLGYSHVPILCWTSKTLASRTHYASRFSSIHQSKTKSVSYRRMACVNAMENVVELQAKVTSKCFFDVEIGGEPAGRIVLGLFGEVVPRTVENFRALCTGEKGYGYKGCSLHRIIKDFMIQGGDFTEGNGTGGISIYGSSFEDENFSLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVEMLESQETNRMDSPRKTCRVVDCGELPLDG	249

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bach1g03087	249	CDD	cyclophilin_ABH_like	84	243	-	-
	Bach1g03087	249	Pfam	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD	88	243	IPR002130	GO:0000413\|GO:0003755
	Bach1g03087	249	FunFam	Peptidyl-prolyl cis-trans isomerase	72	249	-	-
	Bach1g03087	249	SUPERFAMILY	Cyclophilin-like	80	245	IPR029000	-
	Bach1g03087	249	ProSiteProfiles	Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile.	87	244	IPR002130	GO:0000413\|GO:0003755
	Bach1g03087	249	PRINTS	Cyclophilin peptidyl-prolyl cis-trans isomerase signature	176	191	IPR002130	GO:0000413\|GO:0003755
	Bach1g03087	249	PRINTS	Cyclophilin peptidyl-prolyl cis-trans isomerase signature	104	119	IPR002130	GO:0000413\|GO:0003755
	Bach1g03087	249	PRINTS	Cyclophilin peptidyl-prolyl cis-trans isomerase signature	204	219	IPR002130	GO:0000413\|GO:0003755
	Bach1g03087	249	PRINTS	Cyclophilin peptidyl-prolyl cis-trans isomerase signature	191	203	IPR002130	GO:0000413\|GO:0003755
	Bach1g03087	249	PRINTS	Cyclophilin peptidyl-prolyl cis-trans isomerase signature	133	145	IPR002130	GO:0000413\|GO:0003755
	Bach1g03087	249	Gene3D	-	70	248	IPR029000	-
	Bach1g03087	249	PANTHER	PEPTIDYL-PROLYL CIS-TRANS ISOMERASE	85	245	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bach1g03087	Bach-Chr1	40521694	40524393	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bach1g03087	98	242	U-box Gene Family	AT5G67530	43.836	9.59e-32	120

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bach1g03087	K03768		-	gmx:100785805	386.341