Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach1g02941 ATGAGTAGACGTGCAAGCAGAACTGTCTACGTTGGTAATCTACCAGGTGATATTCGCGAAAGAGAGGTGGAAGATTTGTTTGCTAAGTATGGACAGATAACTCACATTGACCTAAAGGTTCCTCCAAGGCCTCCTGGTTATGCATTTGTAGAGTTTGAAGATTCTCAAGACGCTGAGGATGCAATTCGTGGTCGTGATGGCTATGATTTTGATGGGCACAGGTTACGGGTAGAGCCTGCACATGGTGGACGTGGTCATTCATCATCAAGAGATCGTCATAGTAGTCAAAGCAATGGTCGCGGACGTGGTGTATCTAGGCGCTCTGAATATCGTGTTCTAGTCACTGGGTTGCCATCTTCTGCTTCCTGGCAGGATCTCAAAGATCACATGCGGAAGGCAGGTGATGTTTGCTTCTCCCAAGTTTTCCATGACGGAAGAGGTACAACTGGGATTGTAGATTACACAAACTATGAAGACATGAAATATGCAATCAAGAAGCTTGATGATTCTGAGTTCCGGAATGCATTTTCCAGGGCTTATGTTCGTGTGAGGGAGTATGATTCTAGGCGTGACTCCTCTAGAAGTCCTAGTCGTGGCCGATCTTATTCTAGGGGCAGAAGCTATAGCCGCAGTAACAGTCGGGGCCGGAGCCAAAGCAAATCTCCGAAGGGTAAATCTTCGCAGCGTTCACCCGTTAGATCTCCTTCAAAATCTATTTCTCGCTCACGCTCTAGGTCAAGGTCCCGTTCTTTATCAGGATATGGATACTTGCAGCAAACTGGGAATTGGAAATTAGGAACTTGGTGGGATTTGGTTCAATTTCCTGCATCTCAATTTGTTGTGGAGATTGGGAACAAAGGAGAACATGGATTGCTATATTAGAGCTGGATGCCTTGTTTACCAAGGCAATTGGGATTTGGAAATCACCATCAATGAGCAATAGGGACAATTTCATTACGGTTGTTGGATCCAAGATTTGCCCGGCCAATAGGATGCACTATCTGGATTCTCTGGATTTTTGTGGTGCAGTAGGGAAGAATTCTTCTCTTTAGTCCACTGGTGTCTTAATATTATTCTGATTTTTTTTTTAAATAAAATATTTTTAGATAGAATGTCTATAAATTTGCCTTTATTTTTTTCTTAGAATTTTTTTCCTGTTGAGTTGTTAAAATTGTATGATGTTTGGTCCTACCTGTTTCGGATATGATAACTCTGACTTCGGAGAGGCCTCAAGGCTGTTGGATCAAATTTGATAAAGGGAACTTGTGGATTTTAAACTCTATTGTTTCTGGAACTTTTGCAGATCAAGATCGAGATCCAGGTCTCCATTGCCTTTGCGTCATAAAAGCCCAAAAAGACGCAGTGCGAGCAGGAGCAGAAGCAGAAGCCAAAGTAGGAGCA 1401 0.4297 MSRRASRTVYVGNLPGDIREREVEDLFAKYGQITHIDLKVPPRPPGYAFVEFEDSQDAEDAIRGRDGYDFDGHRLRVEPAHGGRGHSSSRDRHSSQSNGRGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRKAGDVCFSQVFHDGRGTTGIVDYTNYEDMKYAIKKLDDSEFRNAFSRAYVRVREYDSRRDSSRSPSRGRSYSRGRSYSRSNSRGRSQSKSPKGKSSQRSPVRSPSKSISRSRSRSRSRSLSGSRSRSSVIKAQKDAVRAGAEAEAKVGARVCLGERLMLSIMRLLDFCLVFWHLDRRDFMDSTFMY 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach1g02941 317 CDD RRM2_SF2_plant_like 110 185 - -
Bach1g02941 317 MobiDBLite consensus disorder prediction 198 239 - -
Bach1g02941 317 CDD RRM1_SF2_plant_like 8 78 - -
Bach1g02941 317 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 110 188 IPR000504 GO:0003723
Bach1g02941 317 PANTHER RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN 6 258 - -
Bach1g02941 317 FunFam ASF/SF2-like pre-mRNA splicing factor SRP31 1 109 - -
Bach1g02941 317 Gene3D - 110 187 IPR012677 -
Bach1g02941 317 MobiDBLite consensus disorder prediction 63 97 - -
Bach1g02941 317 MobiDBLite consensus disorder prediction 185 263 - -
Bach1g02941 317 SUPERFAMILY RNA-binding domain, RBD 6 177 IPR035979 GO:0003676
Bach1g02941 317 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 82 IPR000504 GO:0003723
Bach1g02941 317 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 76 IPR000504 GO:0003723
Bach1g02941 317 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 112 174 IPR000504 GO:0003723
Bach1g02941 317 MobiDBLite consensus disorder prediction 63 109 - -
Bach1g02941 317 Gene3D - 2 109 IPR012677 -
Bach1g02941 317 SMART rrm1_1 111 182 IPR000504 GO:0003723
Bach1g02941 317 SMART rrm1_1 8 78 IPR000504 GO:0003723
Bach1g02941 317 FunFam serine/arginine-rich splicing factor SR34A-like 110 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach1g02941 Bach-Chr1 39606281 39610472 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach1g02941 8 168 Eukaryotic Initiation Factors Gene Family AT1G71770 25.904 9.70e-08 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach1g02941 K12890 - gmx:100789847 328.176