Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach1g02898 ATGTCGTTTAGGAGCATCATACAGGATATGAAGGGAGAGATTGGGAATATTTCTAGGAGAGGATTTGAGGTGAAATTTGGGTATGGGATGAAATCAAGGTCACAGTCACACCGTGATGCCCAGGATATTTCGGTGGTACTTGATGGTTTGAAGCAGAGTTGTTGGGCTAACATGCCGCCAGAGCTTTTAAGGGATGTGCTGGTGAGGATAGAGACCTCTGAAGATGCCTGGCCTGCCCGGAAATACGTGGTTGCCTGTGCTGGTGTTTGCCGCAGTTGGAGAGAAATCGTGAAAGAAATTGTTAAATCTCCTGAAGTATCAGCCAAATTGACATTCCCAATTTCCTTGAAGCAGCCTGGTCCAAGAGGCTCTCTTCTTCAGTGCTATATCAAACGGAATCGCTCGAATCAAACGTACTACCTGTTCCTTGGTTTAAACCAAGCTTCTACAGAAGATGGCAAATTCCTTTTGGCTGCACGCAAGTGTCGACGTCCTACCCATACTGACTATATCATTTCTCTAAATTCTGATGATGTATCAAGAGGGAGTAGCACATATATTGGAAAGTTGAGATCAAACTTTCTGGGTACCAAATTTACCGTGTATGATGCACACCCTCCAGTTGGTGCAGCCAAAGTCACCAAGTCTCGTTCCACTAGGCTAGTTAACCTCAAGCAAGTCTCTCCAAGAGTTCCTGCTGGCAACTATCCCGTCGCACATGTTTCATATGATCTGAATGTCTTGGGCTCCAGGGGCCCTAGGATAATGCAGTGTGCTATGGATGCCATCCCTGCCTCAGCTGTTGAACCAGGAGGCATGGCCCCCACACAGACTCAATTCCTGCATACCAGAATTGATTCTTCTCCATCTATTCCTTTCTTTAGATCAAAATCAACTCGCATAGAGAATTCTCAATCTGTACCCTTGTCCAGCCAAAACGAGGGAATTCTAGTACTACGGAACAAGTCCCCTAGGTGGCATGAACAACTCCAATGCTGGTGTCTAAACTTTAATGGACGAGTGACAGTTGCTTCGGTTAAAAATTTCCAACTGGTTGCTTCTCCAAAGAACGGAGTTTCTGTGCAGGCTCAGGAAAATGTTATCCTCCAGTTTGGAAAAGTTGGGAAGGATGTGTTCACCATGGATTACCAGTATCCCATCTCAGCTTTTGAAGCATTCGCAATATGCCTTAGCAGCTTTGACACCAAGATTGCTTGTGAATGA 1224 0.4534 MSFRSIIQDMKGEIGNISRRGFEVKFGYGMKSRSQSHRDAQDISVVLDGLKQSCWANMPPELLRDVLVRIETSEDAWPARKYVVACAGVCRSWREIVKEIVKSPEVSAKLTFPISLKQPGPRGSLLQCYIKRNRSNQTYYLFLGLNQASTEDGKFLLAARKCRRPTHTDYIISLNSDDVSRGSSTYIGKLRSNFLGTKFTVYDAHPPVGAAKVTKSRSTRLVNLKQVSPRVPAGNYPVAHVSYDLNVLGSRGPRIMQCAMDAIPASAVEPGGMAPTQTQFLHTRIDSSPSIPFFRSKSTRIENSQSVPLSSQNEGILVLRNKSPRWHEQLQCWCLNFNGRVTVASVKNFQLVASPKNGVSVQAQENVILQFGKVGKDVFTMDYQYPISAFEAFAICLSSFDTKIACE 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach1g02898 407 PRINTS Tubby superfamily signature 319 336 IPR000007 -
Bach1g02898 407 PRINTS Tubby superfamily signature 385 407 IPR000007 -
Bach1g02898 407 PRINTS Tubby superfamily signature 186 210 IPR000007 -
Bach1g02898 407 PRINTS Tubby superfamily signature 364 383 IPR000007 -
Bach1g02898 407 PRINTS Tubby superfamily signature 337 353 IPR000007 -
Bach1g02898 407 PRINTS Tubby superfamily signature 235 262 IPR000007 -
Bach1g02898 407 PRINTS Tubby superfamily signature 170 186 IPR000007 -
Bach1g02898 407 ProSitePatterns Tub family signature 2. 392 407 IPR018066 -
Bach1g02898 407 Pfam Tub family 116 402 IPR000007 -
Bach1g02898 407 FunFam Tubby-like F-box protein 112 407 - -
Bach1g02898 407 CDD F-box_AtTLP-like 55 99 - -
Bach1g02898 407 Gene3D Tubby Protein; Chain A 112 407 IPR025659 -
Bach1g02898 407 SUPERFAMILY Tubby C-terminal domain-like 104 407 IPR025659 -
Bach1g02898 407 PANTHER TUBBY-RELATED 33 405 - -
Bach1g02898 407 Pfam F-box domain 55 101 IPR001810 GO:0005515
Bach1g02898 407 SUPERFAMILY F-box domain 49 99 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach1g02898 Bach-Chr1 39283213 39285822 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach1g02898 1 407 TUB Transcription Factor Family AT2G47900 76.585 0.0 638
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Bach1g02898 Tub 3.3e-108 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach1g02898 K19600 - gmx:100809257 717.613