Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach1g02890 ATGGCGGAGGGGAAGGAAGAGAGCAAATCTAGCGAGGAGAGTGTGAAACTGTTTGTAGGTCAAGTTCCGAAGCATATGACGGAAGATGAGCTTCTGGCAATGTTCAAGGAGTTCGCCTTGGTGGACGAAGTCAACATCATCAAGGATAAAACCACTCGCGCCTCTCGAGGCTGCTGCTTCCTAATTTGTCCATCAAGGGAAGAGGCAGACAAGGCCGTTAATGCCTGTCATAATAAGAAAACTCTACCCGGGGCATCTAGTCCGTTGCAAGTGAAGTATGCAGATGGCGAGTTAGAAAGGCTAGAACACAAACTCTTTATTGGCATGCTTCCAAAGAATGTTTCTGAAACTGAAGTCTCCGCTCTGTTCTCCAAGTATGGAACTATAAAGGACTTGCAGATTTTAAGAGGCTCACAGCAAACGAGTAAAGGCTGTGCATTTTTGAAGTACGAAACCAAAGATCAGGCCCTTGCTGCCCTTGAGGCAATCAATGGAAAATATAAAATGGAGTATGTTCGATCTACAAGCGGCATTCAGCCACAAAATCCTGGATCAAGTGTTCCTCTGGTTGTCAAATGGGCTGATACTGAAAAGGAAAGGCAAGCTCGGAGGGCACAGAAAGCACAGTCCCAAGCTTCTAATGCTCCAAGTACTGATCCTCAGCATCCGTCATTATTTGGAGCCTTGCCAATGGGTTATGTGCCCCAATATAATGGATATGGTTATCAGGCCCCTGGGGCTTATGGACTCGTGCCATATCGATTGCCACCATTGCAAAATCAACCTGGTTTCCATAATATGATGCCTCACATGAACCAAGGAAATGCATTGCAACCTGACCTTGGCCCCAATATGAACCATAGAAATTATCCCATGCCTCCCGCAAGTTATGTTGGCTCTTATCCTGCAGTGCCAGGTCTACAGCATCCAATGGCGTACCCTGGAGGAATGATAAGTCCAAGGCCTTTGAGTAGTTCTCCTGGCTCAGTTTCACCCGCAGGTGGGAGTGGTAACTCTGCTACACCTTCAGGTGGCAGTAAAAATTCTGGGAGTCAGCTTGAAGGTCCACCTGGTGCCAATCTCTTTATTTATCACATGCCTCAAGAATATGGAGATGAAGAGCTTGCAACTGCATTTCAACCATTCGGTAGGGTTTTGAGTGCTAAAGTTTTTGTCGATAAAGCAACCGGTGTTAGCAAATGTTTTGGTTTTGTTAGTTATGATTCCCCAGAAGCTGCAGAAGCTGCTATTAGTATGATGAATGGATTCCAATTATGTGGCAAGAAATTGAAGGTTCAGCTAAAGAGGGACAACAAACAGAGTAAGCCTTACTGATGAAACCTGAGTAAGGGAACATTGTAG 1362 0.4545 MAEGKEESKSSEESVKLFVGQVPKHMTEDELLAMFKEFALVDEVNIIKDKTTRASRGCCFLICPSREEADKAVNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSETEVSALFSKYGTIKDLQILRGSQQTSKGCAFLKYETKDQALAALEAINGKYKMEYVRSTSGIQPQNPGSSVPLVVKWADTEKERQARRAQKAQSQASNAPSTDPQHPSLFGALPMGYVPQYNGYGYQAPGAYGLVPYRLPPLQNQPGFHNMMPHMNQGNALQPDLGPNMNHRNYPMPPASYVGSYPAVPGLQHPMAYPGGMISPRPLSSSPGSVSPAGGSGNSATPSGGSKNSGSQLEGPPGANLFIYHMPQEYGDEELATAFQPFGRVLSAKVFVDKATGVSKCFGFVSYDSPEAAEAAISMMNGFQLCGKKLKVQLKRDNKQSKPY 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach1g02890 444 Gene3D - 336 443 IPR012677 -
Bach1g02890 444 FunFam RNA-binding protein BRN1 326 436 - -
Bach1g02890 444 MobiDBLite consensus disorder prediction 322 355 - -
Bach1g02890 444 SUPERFAMILY RNA-binding domain, RBD 9 97 IPR035979 GO:0003676
Bach1g02890 444 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 361 431 IPR000504 GO:0003723
Bach1g02890 444 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 17 81 IPR000504 GO:0003723
Bach1g02890 444 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 105 168 IPR000504 GO:0003723
Bach1g02890 444 MobiDBLite consensus disorder prediction 315 358 - -
Bach1g02890 444 Gene3D - 101 205 IPR012677 -
Bach1g02890 444 SUPERFAMILY RNA-binding domain, RBD 103 439 IPR035979 GO:0003676
Bach1g02890 444 CDD RRM1_2_CELF1-6_like 16 92 - -
Bach1g02890 444 MobiDBLite consensus disorder prediction 206 221 - -
Bach1g02890 444 PANTHER RNA BINDING PROTEIN 14 438 - -
Bach1g02890 444 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 15 96 IPR000504 GO:0003723
Bach1g02890 444 Gene3D - 2 100 IPR012677 -
Bach1g02890 444 PRINTS Paraneoplastic encephalomyelitis antigen family signature 15 30 IPR002343 GO:0003723|GO:1990904
Bach1g02890 444 PRINTS Paraneoplastic encephalomyelitis antigen family signature 123 135 IPR002343 GO:0003723|GO:1990904
Bach1g02890 444 PRINTS Paraneoplastic encephalomyelitis antigen family signature 108 123 IPR002343 GO:0003723|GO:1990904
Bach1g02890 444 FunFam RNA-binding protein BRN1 isoform X1 100 205 - -
Bach1g02890 444 CDD RRM3_CELF1-6 361 433 - -
Bach1g02890 444 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 359 437 IPR000504 GO:0003723
Bach1g02890 444 FunFam RNA-binding protein BRN1 2 99 - -
Bach1g02890 444 MobiDBLite consensus disorder prediction 198 226 - -
Bach1g02890 444 SMART rrm1_1 104 172 IPR000504 GO:0003723
Bach1g02890 444 SMART rrm1_1 360 433 IPR000504 GO:0003723
Bach1g02890 444 SMART rrm1_1 16 92 IPR000504 GO:0003723
Bach1g02890 444 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 103 196 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach1g02890 Bach-Chr1 39229700 39234532 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach1g02890 351 444 Eukaryotic Initiation Factors Gene Family AT1G71770 34.043 1.49e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach1g02890 K13207 - gmx:100813239 728.783
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bach8g00479 8 3073559 3078894 Bach1g02890 1 39229700 39234532 BWGD
Bach1g02890 1 39229700 39234532 Bach1g02890 1 39229700 39234532 ECH