LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bach1g02791	ATGTTTCCTGGAGCCATCTCCAATTCGACTTCTTTGTCCGAAGAAGCCAGTGTCTCTTCTGGCATAAGAGTTCAGGACTTGGCTGGGTTAAATGGTGTAGTCTCAACCGTTTCTCCTCAGCAGCCAGCTCTGAAGATCAAGAAAAAGAGAAGCCAACCAGGAAATCCAGACCCAGATGCTGAAGTGATTGCTTTGTCCCCAAAGACCCTTTTGGCCACCAACAGATTTGTGTGTGAGATCTGCAAAAAGGGTTTTCAAAGAGATCAGAATCTTCAACTTCACAGAAGAGGTCATAACCTTCCATGGAAGCTCAAGCAAAGGAACAGCAAAGAGGTCAAAAAGAAAGCCTATGTTTGCCCCGAGCCTTCATGCGTTCACCACAATCCGTCAAGGGCTCTGGGTGATCTTACAGGAATTAAGAAACACTACTGCAGAAAACATGGAGAGAAGAAGTGGAAATGTGAAAAGTGCTCAAAGATCTATGCAGTTCAATCAGATTGGAAGGCTCATTCCAAAACCTGTGGAACAAGAGAATATAGATGTGATTGTGGAACCCTTTTCTCCAGGAAGGACAGCTTCATTACTCATAGGGCATTTTGTGATGCATTGGCTGAAGAAAGTGCAAGACTCTCCGCAAACCAAATAGCTTCCACAAATCCGTTGGTTCAATCTCTCTTTCTTTTCCCAAACCAGCAGAACTTCTTCAATCCATGGAACCCATCTCCAGAAAACCCTAACCCTAATAACTTTGTCAATGCTGGTGCTGCCCTCCAAATCAAGCCTGAAGCTCAGCACTTCCAGATGCCCACTCTCTCTTCTTCATCATTTCTTCATCAACCACAACACCAAGACCACAAGATCAGCATGGCCATGATAAACTCACCCTTCCACGTCACCCCGCAACCTTCCTCAAACACTGCCATGTCAGCTCACCTTTCAGCCACTGCGCTCCTTCAGAAGGCAGCAACCATTGGTGCTACAACTATCCCAGGCCCGGCTCCTGCTTCTGCTTCTGCCGTTGGTGTTGGGCAAGTGGGTCACGTGACTCATCTCGGCATGGCCGAGTTTGGAACAATGAGTCAGCTTGATTCGGTGGGTCACAACTACGTCAACTTGAGAGGCTTCGCGTCCAGGGATCTTAAGAATGACCGTCTCACGAGGGACTTTCTGGGTCTAACTGGGGACGCCAACGGTAGTGACGGAGGAAATAACGGTGCCGTTGACGTTAGCATCAACGTCAAGGATATGCTGACTTTCACGGGGGGCATAGAGTACCAACCATACGAACATCACCACCACCACTCGCTCTTAAAGTCGCAACAAAGTTTCGGATTTGTTGGGACTACCACTGCCCCGGAGACTTGGGGGAATTGTTGA	1377	0.4793	MFPGAISNSTSLSEEASVSSGIRVQDLAGLNGVVSTVSPQQPALKIKKKRSQPGNPDPDAEVIALSPKTLLATNRFVCEICKKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVKKKAYVCPEPSCVHHNPSRALGDLTGIKKHYCRKHGEKKWKCEKCSKIYAVQSDWKAHSKTCGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARLSANQIASTNPLVQSLFLFPNQQNFFNPWNPSPENPNPNNFVNAGAALQIKPEAQHFQMPTLSSSSFLHQPQHQDHKISMAMINSPFHVTPQPSSNTAMSAHLSATALLQKAATIGATTIPGPAPASASAVGVGQVGHVTHLGMAEFGTMSQLDSVGHNYVNLRGFASRDLKNDRLTRDFLGLTGDANGSDGGNNGAVDVSINVKDMLTFTGGIEYQPYEHHHHHSLLKSQQSFGFVGTTTAPETWGNC	458

Showing 1 to 1 of 1 entries

Previous1Next

Annotation information

Show entries

Search:

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Bach1g02791	458	ProSiteProfiles	Zinc finger C2H2 type domain profile.	76	98	IPR013087	-
Bach1g02791	458	SMART	c2h2final6	152	172	IPR013087	-
Bach1g02791	458	SMART	c2h2final6	76	98	IPR013087	-
Bach1g02791	458	SMART	c2h2final6	117	147	IPR013087	-
Bach1g02791	458	Gene3D	Classic Zinc Finger	145	209	-	-
Bach1g02791	458	PANTHER	SERINE/THREONINE-PROTEIN KINASE RIO	35	414	IPR031140	-
Bach1g02791	458	SUPERFAMILY	beta-beta-alpha zinc fingers	75	172	IPR036236	-
Bach1g02791	458	FunFam	protein indeterminate-domain 12-like	55	123	-	-
Bach1g02791	458	FunFam	protein indeterminate-domain 5, chloroplastic-like	130	209	-	-
Bach1g02791	458	ProSitePatterns	Zinc finger C2H2 type domain signature.	78	98	IPR013087	-

Showing 1 to 10 of 12 entries

Previous1 2Next

Duplication type information

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bach1g02791	Bach-Chr1	38485184	38488315	Dispersed/Wgd

Showing 1 to 1 of 1 entries

Previous1Next

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bach1g02791	15	447	IDZ Gene Family	AT4G02670	51.454	2.16e-135	394

Showing 1 to 1 of 1 entries

Previous1Next

Transcription factors information

Show entries

Search:

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	C2H2	Bach1g02791		None	None	None

Showing 1 to 1 of 1 entries

Previous1Next

Pathway information

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bach1g02791	K25870		-	gmx:100788975	542.732

Showing 1 to 1 of 1 entries

Previous1Next