Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach1g02756 ATGGCGGATGTTGAAGCAGATGTCGCAACAGGAGTGCCCAAGAAGAGAACATTCAAGAAGTTTAGTTTCAGAGGGGTTGATCTCGATGCTCTGCTGGACATGTCTACCGACGAGCTTGTCAAGCTCTTTAGTGCTCGTGCGCGCAGAAGGTTTCAACGTGGTTTGACAAGGAAGCCCATGGCACTAATAAAGAAGCTGCGTAAGGCGAAAAGGGAGGCCCCACCGGGTGAGAAACCAGAGCCAGTAAGGACTCACCTCCGCAACATGATCATTGTACCCGAGATGATTGGTAGCATCATTGGTGTTTACAACGGGAAGACCTTCAATCAAGTTGAAATCAAACCAGAAATGATTGGCCACTATCTTGCTGAATTCTCAATTTCCTACAAGCCCGTCAAGCATGGAAGGCCTGGTATTGGTGCTACTCACTCCTCAAGGTTCATTCCTCTTAAGTGA 456 0.4803 MADVEADVATGVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFSARARRRFQRGLTRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach1g02756 151 NCBIfam 30S ribosomal protein S19 18 151 IPR005713 GO:0003735|GO:0006412|GO:0015935
Bach1g02756 151 PIRSF RPS19p_RPS19a_RPS15e_RPS19o 8 151 IPR002222 GO:0003735|GO:0005840|GO:0006412
Bach1g02756 151 PRINTS Ribosomal protein S19 family signature 116 131 IPR002222 GO:0003735|GO:0005840|GO:0006412
Bach1g02756 151 PRINTS Ribosomal protein S19 family signature 84 103 IPR002222 GO:0003735|GO:0005840|GO:0006412
Bach1g02756 151 PRINTS Ribosomal protein S19 family signature 104 116 IPR002222 GO:0003735|GO:0005840|GO:0006412
Bach1g02756 151 Pfam Ribosomal protein S19 49 134 IPR002222 GO:0003735|GO:0005840|GO:0006412
Bach1g02756 151 Hamap 30S ribosomal protein S19 [rpsS]. 47 140 IPR002222 GO:0003735|GO:0005840|GO:0006412
Bach1g02756 151 ProSitePatterns Ribosomal protein S19 signature. 104 128 IPR020934 GO:0003723
Bach1g02756 151 Gene3D 30s Ribosomal Protein S19; Chain A 8 151 IPR023575 GO:0003735|GO:0005840|GO:0006412
Bach1g02756 151 PANTHER RIBOSOMAL PROTEIN S19P FAMILY MEMBER 10 151 IPR002222 GO:0003735|GO:0005840|GO:0006412
Bach1g02756 151 FunFam 40S ribosomal protein S15 8 151 - -
Bach1g02756 151 SUPERFAMILY Ribosomal protein S19 54 135 IPR023575 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach1g02756 Bach-Chr1 38225196 38227034 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach1g02756 1 151 Cytoplasmic Ribosomal Protein Gene Family AT5G09500 87.417 7.80e-93 264
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach1g02756 K02958 - vvi:100256302 293.893
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bach1g02756 1 38225196 38227034 Bach1g02756 1 38225196 38227034 ECH