Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bach1g02526 | ATGCAATCTCCGTCTCTCAAGATGCAGATCTTCGTGAAGACTTTGACCGGAAAGACAATCACTCTGGAGGTAGAGAGCTCCGACACCATTGATAACGTGAAGGCGAAGATCCAAGATAAAGAAGGGATCCCACCGGATCAGCAGAGGCTAATCTTCGCCGGCAAGCAGCTCGAGGACGGTCGCACCCTCGCCGATTACAACATCCAGAAGGAATCTACCCTTCATCTGGTTCTTCGTTTGAGGGGAGGTATGCAGATTTTCGTGAAAACCCTAACTGGGAAAACAATCACCCTCGAGGTCGAGAGCTCCGATACCATCGATAACGTCAAGGCCAAGATTCAGGACAAGGAAGGTATCCCTCCAGACCAGCAAAGGCTCATCTTCGCTGGCAAGCAATTGGAGGATGGACGAACCCTTGCTGATTACAACATCCAGAAGGAATCGACTCTGCATCTTGTGCTTCGATTGAGGGGTGGTATGCAGATCTTTGTAAAGACTCTTACTGGGAAAACCATCACTTTGGAGGTTGAGAGCTCGGACACGATCGACAACGTTAAAGCGAAAATTCAGGACAAGGAAGGCATTCCACCTGATCAACAGCGTTTGATTTTCGCTGGTAAGCAATTAGAAGATGGCAGAACCCTTGCCGATTACAATATTCAGAAAGAGTCCACACTTCATTTGGTACTTCGGCTCAGAGGAGGGATGCAGATATTCGTGAAGACGCTCACTGGGAAGACCATCACTTTGGAGGTTGAGAGTTCGGATACCATCGATAACGTGAAGGCGAAGATTCAGGACAAGGAGGGTATTCCACCAGATCAGCAGCGTCTCATCTTTGCTGGGAAACAACTGGAAGATGGTCGCACTCTTGCTGATTACAACATTCAGAAAGAATCCACGCTTCACCTTGTCCTTCGTCTTCGTGGTGGTGAATTCTGA | 942 | 0.4841 | MQSPSLKMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGEF | 313 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bach1g02526 | 313 | Gene3D | - | 160 | 235 | - | - | |
| Bach1g02526 | 313 | Gene3D | - | 3 | 83 | - | - | |
| Bach1g02526 | 313 | Gene3D | - | 84 | 159 | - | - | |
| Bach1g02526 | 313 | Gene3D | - | 236 | 313 | - | - | |
| Bach1g02526 | 313 | SUPERFAMILY | Ubiquitin-like | 159 | 235 | IPR029071 | - | |
| Bach1g02526 | 313 | PANTHER | UBIQUITIN | 160 | 237 | - | - | |
| Bach1g02526 | 313 | ProSiteProfiles | Ubiquitin domain profile. | 84 | 159 | IPR000626 | GO:0005515 | |
| Bach1g02526 | 313 | CDD | Ubl_ubiquitin | 236 | 311 | - | - | |
| Bach1g02526 | 313 | ProSitePatterns | Ubiquitin domain signature. | 186 | 211 | IPR019954 | - | |
| Bach1g02526 | 313 | ProSiteProfiles | Ubiquitin domain profile. | 8 | 83 | IPR000626 | GO:0005515 | |
| Bach1g02526 | 313 | ProSiteProfiles | Ubiquitin domain profile. | 236 | 311 | IPR000626 | GO:0005515 | |
| Bach1g02526 | 313 | FunFam | Polyubiquitin 3 | 160 | 235 | - | - | |
| Bach1g02526 | 313 | PRINTS | Ubiquitin signature | 60 | 81 | IPR019956 | - | |
| Bach1g02526 | 313 | PRINTS | Ubiquitin signature | 18 | 38 | IPR019956 | - | |
| Bach1g02526 | 313 | PRINTS | Ubiquitin signature | 39 | 59 | IPR019956 | - | |
| Bach1g02526 | 313 | ProSiteProfiles | Ubiquitin domain profile. | 160 | 235 | IPR000626 | GO:0005515 | |
| Bach1g02526 | 313 | CDD | Ubl_ubiquitin | 84 | 159 | - | - | |
| Bach1g02526 | 313 | SUPERFAMILY | Ubiquitin-like | 5 | 83 | IPR029071 | - | |
| Bach1g02526 | 313 | FunFam | Polyubiquitin 3 | 8 | 83 | - | - | |
| Bach1g02526 | 313 | ProSitePatterns | Ubiquitin domain signature. | 34 | 59 | IPR019954 | - | |
| Bach1g02526 | 313 | CDD | Ubl_ubiquitin | 160 | 235 | - | - | |
| Bach1g02526 | 313 | ProSitePatterns | Ubiquitin domain signature. | 262 | 287 | IPR019954 | - | |
| Bach1g02526 | 313 | FunFam | Polyubiquitin 3 | 84 | 159 | - | - | |
| Bach1g02526 | 313 | SUPERFAMILY | Ubiquitin-like | 236 | 311 | IPR029071 | - | |
| Bach1g02526 | 313 | SMART | ubq_7 | 84 | 155 | IPR000626 | GO:0005515 | |
| Bach1g02526 | 313 | SMART | ubq_7 | 160 | 231 | IPR000626 | GO:0005515 | |
| Bach1g02526 | 313 | SMART | ubq_7 | 236 | 307 | IPR000626 | GO:0005515 | |
| Bach1g02526 | 313 | SMART | ubq_7 | 8 | 79 | IPR000626 | GO:0005515 | |
| Bach1g02526 | 313 | CDD | Ubl_ubiquitin | 8 | 83 | - | - | |
| Bach1g02526 | 313 | SUPERFAMILY | Ubiquitin-like | 81 | 159 | IPR029071 | - | |
| Bach1g02526 | 313 | FunFam | Polyubiquitin 3 | 236 | 311 | - | - | |
| Bach1g02526 | 313 | Pfam | Ubiquitin family | 238 | 309 | IPR000626 | GO:0005515 | |
| Bach1g02526 | 313 | Pfam | Ubiquitin family | 162 | 233 | IPR000626 | GO:0005515 | |
| Bach1g02526 | 313 | Pfam | Ubiquitin family | 10 | 81 | IPR000626 | GO:0005515 | |
| Bach1g02526 | 313 | Pfam | Ubiquitin family | 86 | 157 | IPR000626 | GO:0005515 | |
| Bach1g02526 | 313 | ProSitePatterns | Ubiquitin domain signature. | 110 | 135 | IPR019954 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Bach1g02526 | Bach-Chr1 | 36535891 | 36537036 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Bach1g02526 | 8 | 84 | Cytoplasmic Ribosomal Protein Gene Family | AT3G52590 | 98.701 | 1.70e-48 | 157 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bach1g02526 | K08770 | - | zof:121980679 | 594.734 |