Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach1g02520 ATGTCTACCTCTGCTGCTTCCTTAGCCCTTCCTACTCTCTCTTCCAAATCTCAGTCATTCTCGTATTCGAAACAAGCTTTGTTCTCTACCCAATATGCCTCTTCAGCGTCTTTGAGACTTAATTCGAAGCCCATATCTATTTCTGCTTCTTTTCTCCACTTGGACAGAGCCTGTGCCAGTTTGTCATCTCGTTTCGTCCGCAACGTAGCCCTTTCTTCCGAGTTCGACCAAGAAGAGGAAATCTTGAGTGATGGAGACGAACCCAACTACTCCCCGGACCTTAAGCTCTTTGTGGGTAATCTTCCTTTCAGCGTTGACAGTGCCCAGTTGGCTGATTTGTTCGGAAGCGCTGGAAATGTAGAGATGGTTGAGGTAATTTATGATAAAACGACCGGAAGAAGCAGGGGATTTGGTTTTGTGACAATGTCATCCGCTGAGGAAGTTGAAGCCGCCTCTCAGCAATTCAATGGTTATGAACTAGATGGAAGGCCATTGAGAGTAAATTCGGGACCTCCTCCTCCTCGGAGGGAAAATTCCCCCTTTAGAGGTTCCAGAGGTGGTCCTATTTCAGACACAGGAAACCGTGTTCATGTAGGTAATCTTGCATGGGGTGTTGATAACTTGGCACTTGAGTCACTGTTTGGTGAGCAAGGGAAGGTCTTGGAAGCAAAGGTAATCTATGACAGGGAAAGTGGAAGGTCAAGAGGCTTTGGGTTTGTGACTTACAGTAGTGCTGAAGAGGTGAACAATGCCATTGAGACTTTAGATGGTGTGGACTTGAATGGCAGAGCTATTCGGGTGTCAGTAGCAGATGGTAAGCCAAGGCGTCCATTTTGATCGGTTATCCAAATCTTCCTAATCAAGAGAGGACTTCAGATTGTTGGGAGTTATGTTGCTGCAATTCTGATGTTCTCCAACATTTTGCGAAATGCACTCCTTGAACTGCAACTGCATCTATGCACTGTGGAAGTGTCTGATGTACGTATGTCAGCCTGTAGAAAGAGTGTTAAGTGTCTCTAAAAGTTGAATTTGTATGCCCCATATATTAAGATTTCCGTTAGAATTTGCTTTATAGCCTGCGTTTTATCCACTTTTAGTTATGTAAGTAGATGACTCATCAGATTTAATTGGGTACGCCAAGACGTTATGTGGAAGAATTTTATCATCATAACTATGAAAGGGGAATTTTC 1190 0.4395 MSTSAASLALPTLSSKSQSFSYSKQALFSTQYASSASLRLNSKPISISASFLHLDRACASLSSRFVRNVALSSEFDQEEEILSDGDEPNYSPDLKLFVGNLPFSVDSAQLADLFGSAGNVEMVEVIYDKTTGRSRGFGFVTMSSAEEVEAASQQFNGYELDGRPLRVNSGPPPPRRENSPFRGSRGGPISDTGNRVHVGNLAWGVDNLALESLFGEQGKVLEAKVIYDRESGRSRGFGFVTYSSAEEVNNAIETLDGVDLNGRAIRVSVADGKPRRPF 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach1g02520 278 SMART rrm1_1 195 268 IPR000504 GO:0003723
Bach1g02520 278 SMART rrm1_1 95 168 IPR000504 GO:0003723
Bach1g02520 278 SUPERFAMILY RNA-binding domain, RBD 88 193 IPR035979 GO:0003676
Bach1g02520 278 CDD RRM2_NsCP33_like 195 270 - -
Bach1g02520 278 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 194 272 IPR000504 GO:0003723
Bach1g02520 278 FunFam 28 kDa ribonucleoprotein, chloroplastic 191 276 - -
Bach1g02520 278 SUPERFAMILY RNA-binding domain, RBD 190 276 IPR035979 GO:0003676
Bach1g02520 278 Gene3D - 192 277 IPR012677 -
Bach1g02520 278 Gene3D - 68 191 IPR012677 -
Bach1g02520 278 MobiDBLite consensus disorder prediction 160 193 - -
Bach1g02520 278 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 197 266 IPR000504 GO:0003723
Bach1g02520 278 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 96 166 IPR000504 GO:0003723
Bach1g02520 278 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 94 172 IPR000504 GO:0003723
Bach1g02520 278 FunFam Ribonucleoprotein A, chloroplastic 71 190 - -
Bach1g02520 278 PANTHER OS02G0815200 PROTEIN 14 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach1g02520 Bach-Chr1 36489211 36491595 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach1g02520 96 276 Eukaryotic Initiation Factors Gene Family AT4G34110 34.807 1.69e-20 89.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach1g02520 - - qsa:O6P43_010289 389.037