Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach1g02478 ATGCTGAACCTCACTCTCCCGGGTCAACACCCAGACCCAGAAGCTGTTGTCCACGAAGTTCATAGGAAAGTGAATGCTTCAATTGCAAGAAGGAAAGTGCTGCAAGAATCAATGAAAGACGAGTCGTCGTGCCTAACTGGTAACCCCATTGACGATTGCTGGAAATGTGACTCAAATTGGGCCAACAACAGGCAGAGGCTAGCAGAATGTGCAATTGGGTTTGGACAGTACGCAAAGGGAGGCAAAGATGGCAAATTTTACATTGTCACAGACTCCACCGACGACGACGCCGTTAACCCAAAACCGGGTACACTCCGATACGCAGTGATACAGGATGAGCCCCTGTGGATTGTGTTCCCAAGTAACATGATGGTTAAACTCTCTCAAGAACTCATCTTTAATAGCTACAAGACCCTTGATGGCCGCGGCGCCGATGTACACATTGTTGGCGGTGGCTGCATCACTCTCCAGTATATAAGCAATGTTATCATACACAACATTCACATCCACCATTGTCATCCCTCAGGCAATGCTAACGTACGGTCGAGTCCAGAGCATTACGGGTATCGGACAGAATCAGACGGTGATGGGATCTCGATATTCGGGTCGAAAGACATATGGATCGACCACTGCACACTCTCTCGATGCAAAGACGGGTTGATAGACGCGGTGATGGGGTCGACGGGCATAACCATCTCCAACAACTTCTTCTCACATCACAACGAGGTGATGTTGCTGGGTCACAGCGATGATTACCTCCCCGACTCGGGTATGCAGGTCACCATCGCCTTCAACCATTTCGGGGAGAAGCTGGTGCAGAGAATGCCACGGTGCCGACGTGGCTACATCCACGTGGTCAACAACGAGTACTCCCATTGGGAGATGTATGCTATCGGAGGTAGCGGTAACCCCACCATCAACAGCCAAGGGAACCGCTATACGGCGCCGGTGAATCCCTACGCGAAGGAGGTGACCAAGAGATTGGACACGGAGGATTGGAGGGATTGGAATTGGAGATCGGAGGGGGACGTCATGGTAAACGGAGCATTCTTTGTGGCCTCTGGGGAAGGGGTTGAGGTTAAATACGAGAAGGCCTACAGCGTGGAGCCCAAGTCTGCTGATCATATTGATACGCTCATCATGCACGCCGGGGTTCTCGGCAACGCCAGGGACAACAACCTGGGGATGTGGAGTAGGGGACCCGACAGTGGTGGCGGTGAAGGTCAAATTTCAATGTCTAACGGCCCGGAGTACAGTGATGATATGTCGTGGACCGCAAGGCTGGTTCCACCTTCCTATATTTTCACTCTTGTATCCTCTTTTATTGGGTTGTCATGCTTCTTGTCCTCTAGTATACCCCTAACCATCATTCTATTTCTATAA 1383 0.5083 MLNLTLPGQHPDPEAVVHEVHRKVNASIARRKVLQESMKDESSCLTGNPIDDCWKCDSNWANNRQRLAECAIGFGQYAKGGKDGKFYIVTDSTDDDAVNPKPGTLRYAVIQDEPLWIVFPSNMMVKLSQELIFNSYKTLDGRGADVHIVGGGCITLQYISNVIIHNIHIHHCHPSGNANVRSSPEHYGYRTESDGDGISIFGSKDIWIDHCTLSRCKDGLIDAVMGSTGITISNNFFSHHNEVMLLGHSDDYLPDSGMQVTIAFNHFGEKLVQRMPRCRRGYIHVVNNEYSHWEMYAIGGSGNPTINSQGNRYTAPVNPYAKEVTKRLDTEDWRDWNWRSEGDVMVNGAFFVASGEGVEVKYEKAYSVEPKSADHIDTLIMHAGVLGNARDNNLGMWSRGPDSGGGEGQISMSNGPEYSDDMSWTARLVPPSYIFTLVSSFIGLSCFLSSSIPLTIILFL 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach1g02478 460 Gene3D - 47 387 IPR012334 -
Bach1g02478 460 Pfam Pectate lyase 132 311 IPR002022 -
Bach1g02478 460 SUPERFAMILY Pectin lyase-like 48 375 IPR011050 -
Bach1g02478 460 PRINTS Pollen allergen Amb family signature 70 87 IPR018082 -
Bach1g02478 460 PRINTS Pollen allergen Amb family signature 296 315 IPR018082 -
Bach1g02478 460 PRINTS Pollen allergen Amb family signature 336 360 IPR018082 -
Bach1g02478 460 PRINTS Pollen allergen Amb family signature 94 119 IPR018082 -
Bach1g02478 460 PRINTS Pollen allergen Amb family signature 130 146 IPR018082 -
Bach1g02478 460 PRINTS Pollen allergen Amb family signature 194 215 IPR018082 -
Bach1g02478 460 PRINTS Pollen allergen Amb family signature 274 293 IPR018082 -
Bach1g02478 460 PRINTS Pollen allergen Amb family signature 365 388 IPR018082 -
Bach1g02478 460 SMART amb_all 122 319 IPR002022 -
Bach1g02478 460 PANTHER PECTATE LYASE 18-RELATED 9 388 IPR045032 GO:0030570
Bach1g02478 460 FunFam Pectate lyase 47 387 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach1g02478 Bach-Chr1 36167257 36170212 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach1g02478 1 451 Polysaccharide Lyase AT3G53190 73.753 0.0 665
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach1g02478 K01728 - qsa:O6P43_006610 769.615
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bach8g02754 8 34213196 34218862 Bach1g02478 1 36167257 36170212 BWGD
Bach1g02478 1 36167257 36170212 Bach1g02478 1 36167257 36170212 ECH