Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach1g02446 ATGGCGGTTCCTCCGACGGTCGCCGCCTCTGCGGCGTCGCTTTACGTCGGCGACCTCCATCCTGACGTCACCGATGGTCTGCTTTTTGACGCATTCTCCGAGTTCAAGAGCCTTACATCTGTTCGGGTCTGTAGGGACTCCTCCACAGGCAGGTCACTCTGTTACGGCTACGTCAACTTCATCTCTCCACAAGACGCAATTCGTGCTATTGAGGTGAAGAACCATTCTACACTGAATGGGAAAGTGATACGGGTCATGTGGTCAGAACGTCATCCTGATGTAAGGAAAAGTGGCATTGGGAATGTGTTTGTTAAGAACTTGGCTGAATCAATAGATAATGTGGGATTACAAGATTTATTTCAAAAATTTGGGACTATTCTGTCAAGCAAAGTTGTCATGTCTGATGATGGTAAGAGCAAAGGATATGGATTTGTTCAATTTAACTCTGAGGAATCTGCAAACGCTGCCATTGACAAGTTGAATGGAAGTACTGTTGGGGATAAGCAGATATATGTTGGGAAGTTTGTCAAAAAAAGTGACCGCGTTTTGCCCAGCCCTGATGCTAAATACACAAATTTATACATAAAAAACTTGGACCCAGATATCACAGAAGAGATTCTGCGGGAAAAGTTCTCGTCTTTTGGTAAAATTGTGAGCTTAGCTCTAGCAAAGGACGACAATGGGATATCAAAAGGTTTTGGCTTTGTGAATTTTGATAACCCAGATGATGCTAGACGGGCGCTGGAAGCAATGAATGAGTCACAACTAGCAGGCTCAAAGATGCTATATGTAGCCAGGGCACAAAAGAAGGCTGAGCGTGAGCAGATATTGCATCATCAGTTTGAGGAGAAACGTAAGGAACAAATGTTGAAGTATAAGGGATCAAACGTTTATGTGAAGAACATTGACGATGATGTTAGTGATGATGAACTGCGAGATCATTTTAGTGCATGTGGTACTATAACTTCTGTAAAAGTTATGCGGGATGACAAAGGGATGAGCAAGGGGTTTGGCTTTGTCTGCTTTTCCACCCCTGAGGAGGCCAAGAAAGCTGTGAACACTTTTCACGGTTGTATGTTTCATCGTAAACCACTGTATGTTGCCATTGCTCAGAGAAAGGAGGATAGACAAGTGCAACTGCAGCTCCAGTTTGCACAGCGAATAGCGGGATTAGCTGGACCATCAACTGCTGTTATCCCTGGAGGATATCCTCCTTACTATTACACTGCTCCTGGTGTTGTTTCGCAGGTCCCTTCTCGAACTGGCCTAATGTATCAACCTCTGGGATTGAGACCAGGGTGGAGGGCCAATGGCTTTGCACCAACCAGACCATCCTTTCAACAGTTGCCAGTCCCTGTTGCTTCTAATACTACAAGACAACATAGGCAAAACAGGGGCAGGATGAACGGGCATACAATGTCACAGGGAAACACTCACTCTGGTATATATATTCCACAGGCACAGCAGCCTTCTCCAGCAGCGGCCTCGTCAAAAGAATCAACTATTCAGCAGCGGACTGGGCAGGCTAAGTATGTGCCCAGTGGGCGCCAGCGTGAGATGGAAAAAGGATCTGGAGTCTCATCCATTGGTTCTAACTCTGCTGGAGGGTCCCAGGTATCCGAAATGCTCCATAGCATGCTAGCCGCTGCTTCTCCGGAGCAGCAGAAACAGATACTTGGCGAGCATCTTTACCCACTTGTGCAGAAACTCAAGCCTGGCCTAGCAGCAAAGATTACAGGGATGCTTCTGGAGATGGACAATGGAGAATTGCTGCTTCTCTTGGAATCTCCGGAGTCTCTGTCTGCCAAGGTGGAAGAAGCAGTGCAAGTGCTGAAGAACTCTAAAACCAAAGTTTCTGGCCAGGATGTACTTCATCCGAATTTCCTTTCCGCTGAGGTTGCAGTGAACTGA 1911 0.4647 MAVPPTVAASAASLYVGDLHPDVTDGLLFDAFSEFKSLTSVRVCRDSSTGRSLCYGYVNFISPQDAIRAIEVKNHSTLNGKVIRVMWSERHPDVRKSGIGNVFVKNLAESIDNVGLQDLFQKFGTILSSKVVMSDDGKSKGYGFVQFNSEESANAAIDKLNGSTVGDKQIYVGKFVKKSDRVLPSPDAKYTNLYIKNLDPDITEEILREKFSSFGKIVSLALAKDDNGISKGFGFVNFDNPDDARRALEAMNESQLAGSKMLYVARAQKKAEREQILHHQFEEKRKEQMLKYKGSNVYVKNIDDDVSDDELRDHFSACGTITSVKVMRDDKGMSKGFGFVCFSTPEEAKKAVNTFHGCMFHRKPLYVAIAQRKEDRQVQLQLQFAQRIAGLAGPSTAVIPGGYPPYYYTAPGVVSQVPSRTGLMYQPLGLRPGWRANGFAPTRPSFQQLPVPVASNTTRQHRQNRGRMNGHTMSQGNTHSGIYIPQAQQPSPAAASSKESTIQQRTGQAKYVPSGRQREMEKGSGVSSIGSNSAGGSQVSEMLHSMLAAASPEQQKQILGEHLYPLVQKLKPGLAAKITGMLLEMDNGELLLLLESPESLSAKVEEAVQVLKNSKTKVSGQDVLHPNFLSAEVAVN 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach1g02446 636 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 191 269 IPR000504 GO:0003723
Bach1g02446 636 SUPERFAMILY RNA-binding domain, RBD 291 384 IPR035979 GO:0003676
Bach1g02446 636 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 539 616 IPR002004 GO:0003723
Bach1g02446 636 MobiDBLite consensus disorder prediction 458 537 - -
Bach1g02446 636 Coils Coil 264 284 - -
Bach1g02446 636 Gene3D - 3 98 IPR012677 -
Bach1g02446 636 PANTHER OS02G0815200 PROTEIN 189 373 - -
Bach1g02446 636 SMART poly_2 551 614 IPR002004 GO:0003723
Bach1g02446 636 CDD RRM3_I_PABPs 190 270 - -
Bach1g02446 636 CDD RRM2_I_PABPs 98 174 IPR045305 -
Bach1g02446 636 Gene3D - 537 626 - -
Bach1g02446 636 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 100 177 IPR000504 GO:0003723
Bach1g02446 636 FunFam Polyadenylate-binding protein 278 386 - -
Bach1g02446 636 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 193 260 IPR000504 GO:0003723
Bach1g02446 636 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 297 365 IPR000504 GO:0003723
Bach1g02446 636 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 14 84 IPR000504 GO:0003723
Bach1g02446 636 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 102 170 IPR000504 GO:0003723
Bach1g02446 636 FunFam Polyadenylate-binding protein 97 181 - -
Bach1g02446 636 Gene3D - 182 277 IPR012677 -
Bach1g02446 636 Gene3D - 278 381 IPR012677 -
Bach1g02446 636 SUPERFAMILY RNA-binding domain, RBD 182 275 IPR035979 GO:0003676
Bach1g02446 636 FunFam Polyadenylate-binding protein 182 277 - -
Bach1g02446 636 FunFam Polyadenylate-binding protein 537 623 - -
Bach1g02446 636 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 12 612 IPR006515 GO:0003723
Bach1g02446 636 SMART rrm2_1 101 173 IPR003954 GO:0003676
Bach1g02446 636 SMART rrm2_1 192 264 IPR003954 GO:0003676
Bach1g02446 636 SMART rrm2_1 296 368 IPR003954 GO:0003676
Bach1g02446 636 Pfam Poly-adenylate binding protein, unique domain 546 611 IPR002004 GO:0003723
Bach1g02446 636 FunFam Polyadenylate-binding protein 4 96 - -
Bach1g02446 636 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 12 90 IPR000504 GO:0003723
Bach1g02446 636 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 295 372 IPR000504 GO:0003723
Bach1g02446 636 SUPERFAMILY PABC (PABP) domain 465 622 IPR036053 GO:0003723
Bach1g02446 636 CDD RRM4_I_PABPs 294 372 - -
Bach1g02446 636 SUPERFAMILY RNA-binding domain, RBD 13 179 IPR035979 GO:0003676
Bach1g02446 636 MobiDBLite consensus disorder prediction 458 511 - -
Bach1g02446 636 Gene3D - 100 181 IPR012677 -
Bach1g02446 636 SMART rrm1_1 192 265 IPR000504 GO:0003723
Bach1g02446 636 SMART rrm1_1 296 368 IPR000504 GO:0003723
Bach1g02446 636 SMART rrm1_1 13 86 IPR000504 GO:0003723
Bach1g02446 636 SMART rrm1_1 101 173 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach1g02446 Bach-Chr1 35933581 35938676 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach1g02446 12 634 Eukaryotic Initiation Factors Gene Family AT2G36660 53.589 0.0 639
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach1g02446 K13126 - gmx:100779547 974.541
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bach8g00879 8 5792822 5797371 Bach1g02446 1 35933581 35938676 BWGD
Bach1g02446 1 35933581 35938676 Bach1g02446 1 35933581 35938676 ECH