Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach1g02368 CCGACTCACGCTTTGCATCTTTTTGATTTTGCGCATTCAGTTGCCCTGCAAGCTTGCTTTCTTAGATACATAAAATGCCGAGGACAAGAGAGAGTGATGAAGCTGCCCATAATCCTGAGTCAGCAGACAATGATCCTGAAAAACCTACTGATTCCGAAGAGCAGGTAGACCTTGATGATGAGAATGATCAAGAGGAGACAATGGAGGAAGAAATTGAGTATGAAGAAATAGAGGAGGAAGTGGAAGAGGAAGAGGAGGAGGAGATGGTAGAGGAAGAGGAGGAGGACAAGGGGGCTGCCAATGGAGATTATGAGGAGGAGATGAAAGTTGCTGACAATGAGGATGAAGATGAGAAAAAGAAGCACGCAGAGCTTCTTGCACTTCCACCTCATGGGTCAGAGGTTTACCTTGGTGGTGTTCCTCACACTGCTTCTGAAGAGGATTTAAAGAGCTTTTGTGAATCTGTGGGAGAAGTCTCAGAGGTTAGGATCATGAAAGAGAAAGGATCAGGTGAAGCAAAGGGTTATGCTTTTGTGACCTTCAAGATAAAGGAGCAGGCTTCTAAGGCCATTGAGAAGCTGAATAATTGTGAAGTTAAGGGTAGAAAAATAAAGTGCTCAGCATCCCAAGCAAAGCATAAGTTGTTCATTGGTAATGTTCCAAGAAGTTGGACACCAGAAGATATGAAAAAGGCTGTTACAAAAATTGGGCCTGGCGTCAGTTCTGTAGAATTGTTGAGGGACCCACAGAATTCCAGCCGTAATCGGGGATTTGCTTTTATCGAGTATTACAATCATGCTTGTGCCGAATATTCAAGGCAGAAGATGTCAAACCCAAAATTCAAACTTGACAATAATGCTCCTACGGTGAGCTGGGCTGACCCTAAGAATTCTGATTCATCAGCGACCTCCCAGGTAAAGGCAGTGTATGTCAAGAATCTACCAGAGGACATTACTCAGGATCGGTTAAGAGAACTGTTTGAACATCATGGAAAAATTACAAAAGTGGTTCTCCCTCCTGCAAAAGCAGGACAAGAGAAGAGCAGATTTGGTTTTGTTCACTTTGCTGAAAGGTCAAGCGCCATGAAGGCCTTGAAGAATACTGAGAAGTATGAAATTGACGGCCAAGTTTTGGAGTGCTCACTAGCGAAGCCCCAAGCAGATCAGAAGTCATCTGGGCTGCCAAATTCACAGAATCCTGTTGTACTTCCAACTTACCCACCTCGTCTTGGTTATGGTGTAGTTGGGGGTGCCTATGGTGCTATGGGTGCAGGATATGGTGCTGCAGGCTTCACACAACCGATGATGTATGGTAGGGGATCAACTCCTGCTGGCATGGCGATGATGCCAATGCTTTTACCTGATGGAAGAATAGGATACGTATTGCAACAACCTCCGTTGCAACCTCACTCCCCTCAACCTGCACCCCGGAGTGGTAGGAAAGCTGATGGTAGTTCAAGTGGTGGGAAGCGCGCTAATGTCAATAACCGTGGGCGTGACCGATATAACCCTTATTAA 1517 0.4542 MPRTRESDEAAHNPESADNDPEKPTDSEEQVDLDDENDQEETMEEEIEYEEIEEEVEEEEEEEMVEEEEEDKGAANGDYEEEMKVADNEDEDEKKKHAELLALPPHGSEVYLGGVPHTASEEDLKSFCESVGEVSEVRIMKEKGSGEAKGYAFVTFKIKEQASKAIEKLNNCEVKGRKIKCSASQAKHKLFIGNVPRSWTPEDMKKAVTKIGPGVSSVELLRDPQNSSRNRGFAFIEYYNHACAEYSRQKMSNPKFKLDNNAPTVSWADPKNSDSSATSQVKAVYVKNLPEDITQDRLRELFEHHGKITKVVLPPAKAGQEKSRFGFVHFAERSSAMKALKNTEKYEIDGQVLECSLAKPQADQKSSGLPNSQNPVVLPTYPPRLGYGVVGGAYGAMGAGYGAAGFTQPMMYGRGSTPAGMAMMPMLLPDGRIGYVLQQPPLQPHSPQPAPRSGRKADGSSSGGKRANVNNRGRDRYNPY 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach1g02368 480 MobiDBLite consensus disorder prediction 77 93 - -
Bach1g02368 480 SUPERFAMILY RNA-binding domain, RBD 105 273 IPR035979 GO:0003676
Bach1g02368 480 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 188 270 IPR000504 GO:0003723
Bach1g02368 480 MobiDBLite consensus disorder prediction 436 480 - -
Bach1g02368 480 CDD RRM_SF 110 182 - -
Bach1g02368 480 MobiDBLite consensus disorder prediction 1 93 - -
Bach1g02368 480 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 282 360 IPR000504 GO:0003723
Bach1g02368 480 MobiDBLite consensus disorder prediction 27 76 - -
Bach1g02368 480 MobiDBLite consensus disorder prediction 1 26 - -
Bach1g02368 480 Gene3D - 189 269 IPR012677 -
Bach1g02368 480 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 110 180 IPR000504 GO:0003723
Bach1g02368 480 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 284 353 IPR000504 GO:0003723
Bach1g02368 480 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 190 256 IPR000504 GO:0003723
Bach1g02368 480 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 15 458 - -
Bach1g02368 480 SMART rrm1_1 109 182 IPR000504 GO:0003723
Bach1g02368 480 SMART rrm1_1 189 266 IPR000504 GO:0003723
Bach1g02368 480 SMART rrm1_1 283 356 IPR000504 GO:0003723
Bach1g02368 480 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 108 186 IPR000504 GO:0003723
Bach1g02368 480 Gene3D - 271 404 IPR012677 -
Bach1g02368 480 SMART rrm2_1 283 356 IPR003954 GO:0003676
Bach1g02368 480 SMART rrm2_1 109 182 IPR003954 GO:0003676
Bach1g02368 480 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 271 380 - -
Bach1g02368 480 SUPERFAMILY RNA-binding domain, RBD 275 365 IPR035979 GO:0003676
Bach1g02368 480 Coils Coil 33 72 - -
Bach1g02368 480 Gene3D - 27 188 IPR012677 -
Bach1g02368 480 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 189 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach1g02368 Bach-Chr1 35396903 35401031 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach1g02368 146 459 Eukaryotic Initiation Factors Gene Family AT2G23350 25.937 5.81e-20 91.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach1g02368 K13161 - qsa:O6P43_005954 663.685