Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach1g02308 ATGGAAGAGATTGATATTCCTCCGTTCTTCCTCTGTCCTATTTCCTTAGAAATTATGAAAGATCCAGTCACTGTCTCCACGGGTATTACCTATGACAGAGAGAGCATTGAGAAATGGTTGTTTTCTGGGAAGAACAAGACTTGCCCAGTAACCAAACAACTGCTATCAGATGTTGTTGATCTCACCCCCAACCACACTCTTCGGCGGTTGATTCAAGCTTGGTGTACAATGAACGCCTCTCACGGCATCGAAAGGATTCCAACACCTAAGCCTCCAATCAACAAATCCCAGATCGCAAAACTCCTCAAAGATGCTCATGAAACCCCTCAATTGCAGATTCAATGTCTCAGAAGACTCAAAACCATCGCTTCTGAGAGTGAAACGAACAGGCACTGCATGGAAGCTGCTGGTGCTGTTGAGTTCTTAGCCTCAGTTGTACACAACAACATAAATTCTGCAGCTTTACCAGAAGATGCCAACCCAGGAGATGGGTTTGAAGTATTGAGAACCAGTTCAGCTGATGAAGCCTTAAACATCCTCCACAGCCTTCATGTATCTGAAGCTAGACTGAAGACTCTTGTAGGCTTCAAAAATGGGGAATTTTTTGTCTCGTTGACAAGAGTCATGCAACGAGGAATGTATGAATCACGAACTTATGCTGTTCTATTGTTGAAATCCATGTTTGAAGTGGCTGATCCTATGCATCTGCTCAATCTAAGAACTGAACTGTTCGTTGAATTAGTACAAGTTTTAAAAGATCAAATTTCCCAGAAGGCCTCAAAAGCTACACTCCAAACACTCATCAAAATCTGTCCGTGGGGAAGAAACAGGATCAAAGCCGTGAAAGCTGGGGCTGTTCCAGTTTTGATTGATCTTCTTCTCGACTGTAAGGACAGAAAACCTTGTGAAATGATGCTGATGGTATTGGACATTATGTGTAGTAGTGCTGAAGGACGAGCCGAGTTGTTGAGCCATGGTGCTGGGCTTGCCATCGTGTCCAAAAAGATTCTAAGAATTTCTACAGCGGCAAACGATAGGGCTGTGAGGATTCTGTTGTCCATTTCAAAGTTCTCTGCAACTCCTACTGTTCTTCAAGAAATGCTACAACTGGGCGTGGTGGCCAAGCTTTCTTTGGTGCTTCAAGTTGAAAGTGGAAACAAGGCAAAGGAGAAGGCCAGAGAGATACTTAAATTGCATGGTCGGGCTTGGAGGAATTCTCCTTGCATGCCAAGCAATTTGTTCTCTTCATACCCAGCTTAG 1260 0.4381 MEEIDIPPFFLCPISLEIMKDPVTVSTGITYDRESIEKWLFSGKNKTCPVTKQLLSDVVDLTPNHTLRRLIQAWCTMNASHGIERIPTPKPPINKSQIAKLLKDAHETPQLQIQCLRRLKTIASESETNRHCMEAAGAVEFLASVVHNNINSAALPEDANPGDGFEVLRTSSADEALNILHSLHVSEARLKTLVGFKNGEFFVSLTRVMQRGMYESRTYAVLLLKSMFEVADPMHLLNLRTELFVELVQVLKDQISQKASKATLQTLIKICPWGRNRIKAVKAGAVPVLIDLLLDCKDRKPCEMMLMVLDIMCSSAEGRAELLSHGAGLAIVSKKILRISTAANDRAVRILLSISKFSATPTVLQEMLQLGVVAKLSLVLQVESGNKAKEKAREILKLHGRAWRNSPCMPSNLFSSYPA 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach1g02308 419 FunFam RING-type E3 ubiquitin transferase 1 84 - -
Bach1g02308 419 Pfam U-box domain 6 78 IPR003613 GO:0004842|GO:0016567
Bach1g02308 419 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 85 IPR013083 -
Bach1g02308 419 PANTHER WDSAM1 PROTEIN 2 410 IPR045185 GO:0061630
Bach1g02308 419 SUPERFAMILY ARM repeat 213 384 IPR016024 -
Bach1g02308 419 Gene3D - 94 405 IPR011989 -
Bach1g02308 419 ProSiteProfiles U-box domain profile. 5 81 IPR003613 GO:0004842|GO:0016567
Bach1g02308 419 SMART Ubox_2 9 74 IPR003613 GO:0004842|GO:0016567
Bach1g02308 419 CDD RING-Ubox_PUB 7 57 IPR045210 -
Bach1g02308 419 SUPERFAMILY RING/U-box 3 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach1g02308 Bach-Chr1 34960955 34962214 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach1g02308 2 418 U-box Gene Family AT2G35930 59.382 0.0 512
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach1g02308 - - gmx:100809123 628.246