Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach1g02305 ATGGCTGCCACAGCTACAGCTACCGCTTCCGCTTCTATCTGCAATCGAATCTGTAACTTGTCCCTTACTCCCTCTTCCATTTCAATCACCACCAGCAACTTTCCACAAAGACCCATATCCCACAAACCCCTCAACCTCAAATCCCAACAAGTAAACAATACTCTTACTGTCACTGCTCCTCTCTCTATTTATCGTCTTCGTCTAGCTTCTTCTGCTTTCGATGGTTACCAAGTCGCTGAAGACACCCAACAAGAAGACCCAAAGCCAGAACCTTTCGAAGAACAAGAGCAAAAGGTATCAGATTCTAGTGAATCCGGGAGGCTATATGTTGGAAATTTGCCTTATTCTATGACTTCATCCCAGTTGGCAGAAATTTTTGGGGAGGCTGGCAACGTGTTTTCTGTGGAGATCGTCTATGATCGCGTTACGGATAGAAGCAGAGGATTTGCATTTGTTACAATGGGGAGTGTCGAGGATGCTAAAGAAGCAATTCGAATGTTTGATGGTTCTCAAATTGGAGGTAGGACTGCGAAGGTGAACTTTCCAGAAGTGCCGATTGGAGGTGAAAGGCTAGTAATGGGGCCAAAAGTAAGAGACAACTATAGAGGCTTTGTGGACAGTCCTCACAAGATCTATGCTGGAAACCTTGGTTGGGGACTCACTTCACCGGGACTTCGAGATGCTTTTGCTGGCCAGCCAGGATTGTTGAGTGCCAAGATCATCTATGAGAGGGACAGCGGAAGATCTCGAGGTTTTGGCTTCGTCTCTTTCGACACTGCTGAGCATGCAGACTCTGCGTTAAATGCCATGAATGGTGTGGAGGTTCAAGGCCGCCCCTTACGACTGAATTTAGCTGCAGAGAGGACGGTTGCATCTTCTCAACCTCAATTAATTGAGCAAAATACAGAGAATGATGGTGTTGATCCCTCTGAATTGCTCTCTAGTATTAGCACATGAGGAATGTATATAACTCAACTCGATGCATTTTTGCCAACATCCATTTAGC 1006 0.4573 MAATATATASASICNRICNLSLTPSSISITTSNFPQRPISHKPLNLKSQQVNNTLTVTAPLSIYRLRLASSAFDGYQVAEDTQQEDPKPEPFEEQEQKVSDSSESGRLYVGNLPYSMTSSQLAEIFGEAGNVFSVEIVYDRVTDRSRGFAFVTMGSVEDAKEAIRMFDGSQIGGRTAKVNFPEVPIGGERLVMGPKVRDNYRGFVDSPHKIYAGNLGWGLTSPGLRDAFAGQPGLLSAKIIYERDSGRSRGFGFVSFDTAEHADSALNAMNGVEVQGRPLRLNLAAERTVASSQPQLIEQNTENDGVDPSELLSSIST 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach1g02305 318 FunFam 33 kDa ribonucleoprotein, chloroplastic 191 295 - -
Bach1g02305 318 Gene3D - 70 185 IPR012677 -
Bach1g02305 318 SMART rrm1_1 107 180 IPR000504 GO:0003723
Bach1g02305 318 SMART rrm1_1 210 283 IPR000504 GO:0003723
Bach1g02305 318 CDD RRM1_PSRP2_like 107 186 - -
Bach1g02305 318 MobiDBLite consensus disorder prediction 78 104 - -
Bach1g02305 318 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 184 IPR000504 GO:0003723
Bach1g02305 318 MobiDBLite consensus disorder prediction 292 318 - -
Bach1g02305 318 Gene3D - 195 297 IPR012677 -
Bach1g02305 318 PANTHER OS02G0815200 PROTEIN 41 288 - -
Bach1g02305 318 MobiDBLite consensus disorder prediction 81 101 - -
Bach1g02305 318 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 209 287 IPR000504 GO:0003723
Bach1g02305 318 CDD RRM2_NsCP33_like 210 285 - -
Bach1g02305 318 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 176 IPR000504 GO:0003723
Bach1g02305 318 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 211 281 IPR000504 GO:0003723
Bach1g02305 318 SUPERFAMILY RNA-binding domain, RBD 105 288 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach1g02305 Bach-Chr1 34941485 34942796 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach1g02305 93 288 Eukaryotic Initiation Factors Gene Family AT3G16380 30.000 1.17e-20 90.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach1g02305 - - qsa:O6P43_009680 412.535