Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach1g02219 ATGTATGCAATTCAATGGAGATCCGGGAAAGAGCTTAGCAGCGTAGCCAATATTAGAGGATCATCAGAAAGTTTTCAGGCCACGAGAGCACCCTGCAGTAACGTTCTGACTCACCTGCAAACACCACCTGCCTTTTCTCCTACCAAAACCTGCCTGACTTTTGAACAAAACGAGAATCAGATCAACAACATTCCTGGTTTCCCTTTTGAGTTTCAAAATAAAATAGATCCAGAAGAAAATGTACTTTGTCAATCTAATTACGGGGATAACTTCACCAATACCACCCAATTAGATGAATCTTTTTGGCATAGCATTGAAGACAGCTTCAACTTTTTTCAGTTTCAGGGTCTCAATATGCCAATTAGTGATGAGCATTTTTCAGTAGATACTAAGTTGCCGGAGGAGAACCATGCCACTGCTGCCACAGTTGGGAGGCTAACTTCTATTTCTCTACAGAGAAATCAGTTGGCTAAACAGGACAATAATCATGGTAAACATTCTTCTGGACCAAGTGAGGCTGGTGGTGTTTGTTCAAGTTCCTCCATCTATGTCTCTGAGACAGCTTCAAAAGGTACGAAAAGGAGAATAAGATGGACCAAAGATCTTCAGGAGCCATTTATTGCGGTTGTTGATCAACTTGGCGGTCCTCAAAAGGCAAAGCCTAAGGAAATACTGAAGATGATGGGTTCAGATGAGCTAACCGTATCTCACATTAAAAGTCACTTGCAGAAATACCGATCTACAATTCACATGCAGAAAGCTCTGCAGGAAGGACATGTGGAAAAGCATAGAAGAGATGGGATCACTGAGCTTCAACTCAAAATCCATATGCAAATAGAGGAGTCACGGCAGCTGCAACTAGAGGTGGAGAGGAGTCTTAAGGAACAACTAAAGAACTTGAAGGACGACGACTGGAGACGATCAAAACCAGAAATCAAAGGAGAACCACTACCAATGGAGGATATGAAAAAGAGAAAGCTAGACGAGGCCGGCAACGGTGACTTTTCTTCGAAGGAAGAGCTTCGCTTGCTTCTTGACCCGCTAGCAAAGCCCCAGCTCGTCGATCTTCTCGCAAAATTAGGGTCCAAATATCCTTCAATTGCTGAAGAAATAAAAAGTATTGCGAGTGCAGATCCTGTCCATCGAAAGCTTTTTGTCCGTGGCTTGGCATGGAATACCACTTCAGAAACATTGTGTGCTGCATTTCAAGAACATGGAGAGATTGAGGAAGGTGCAGTGATCTATGATAAAACAACAGGAAGGTCTCGTGGGTATGGTTTCATCACTTACAAACATATAGAATCAACTCACTGTGCATTGAGAGCACCTAGCAAGTTAATTGATGGCAGAATGGCTGTCTGTAATCTAGCTTGTGAGGGCCTAACTGGTGCAAGTAGTGCGCCTGATCTTTCCCTGAGGAAGCTGTACATTGGGAGCTTATCCCCAGAAGTCACAAGTGAAATGCTACTCAACTTTTTTGAGAGGCATGGTGAAATAGAGGAAGGTTCGGTTGCCTATGACAAAGATACAAATGAATCTCGTGGTTTTGGCTTTGTTACGTACAAGACAGCAGAAGCTGCAAAGAAGGCTATAGATGATCCAGAAAAGACTCTTGGGGGTAGGAATATTATTGTAAAATATGCTGATTCCCATAAGAATAAAACAGGTCAGGCACCGTTAACTGGAGGAGTGACTCCAATGGCGGCAGTACCTATGGCCCCTGGATATATGCAGCCTGGAATATCTAATGTCGGCACTCCTCCTGTTGGCTACGCTTACCCTCAAACTGTTCCCCCATACCCTACAGCTTCTTATCCTGGCCTTCCCACTGCACCTGCTCCTTATCCAATGCAAGGGCAAGTATCGTATCCCCCAGTTCCTGTGAAGAAAGATTCACTTGGGCTCCCACCAGCTCCACCTATGGGAATGGGCAACTACCCGTATTACTATCCTAAGCAATAG 1962 0.4409 MYAIQWRSGKELSSVANIRGSSESFQATRAPCSNVLTHLQTPPAFSPTKTCLTFEQNENQINNIPGFPFEFQNKIDPEENVLCQSNYGDNFTNTTQLDESFWHSIEDSFNFFQFQGLNMPISDEHFSVDTKLPEENHATAATVGRLTSISLQRNQLAKQDNNHGKHSSGPSEAGGVCSSSSIYVSETASKGTKRRIRWTKDLQEPFIAVVDQLGGPQKAKPKEILKMMGSDELTVSHIKSHLQKYRSTIHMQKALQEGHVEKHRRDGITELQLKIHMQIEESRQLQLEVERSLKEQLKNLKDDDWRRSKPEIKGEPLPMEDMKKRKLDEAGNGDFSSKEELRLLLDPLAKPQLVDLLAKLGSKYPSIAEEIKSIASADPVHRKLFVRGLAWNTTSETLCAAFQEHGEIEEGAVIYDKTTGRSRGYGFITYKHIESTHCALRAPSKLIDGRMAVCNLACEGLTGASSAPDLSLRKLYIGSLSPEVTSEMLLNFFERHGEIEEGSVAYDKDTNESRGFGFVTYKTAEAAKKAIDDPEKTLGGRNIIVKYADSHKNKTGQAPLTGGVTPMAAVPMAPGYMQPGISNVGTPPVGYAYPQTVPPYPTASYPGLPTAPAPYPMQGQVSYPPVPVKKDSLGLPPAPPMGMGNYPYYYPKQ 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach1g02219 653 FunFam UBP1-associated protein 2C 460 558 - -
Bach1g02219 653 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 475 543 IPR000504 GO:0003723
Bach1g02219 653 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 384 450 IPR000504 GO:0003723
Bach1g02219 653 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 382 459 IPR000504 GO:0003723
Bach1g02219 653 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 473 550 IPR000504 GO:0003723
Bach1g02219 653 Pfam Myb-like DNA-binding domain 197 246 IPR001005 -
Bach1g02219 653 SUPERFAMILY Homeodomain-like 192 248 IPR009057 -
Bach1g02219 653 SUPERFAMILY RNA-binding domain, RBD 381 459 IPR035979 GO:0003676
Bach1g02219 653 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 366 450 - -
Bach1g02219 653 Gene3D - 462 559 IPR012677 -
Bach1g02219 653 CDD RRM2_NsCP33_like 474 548 - -
Bach1g02219 653 NCBIfam myb-like DNA-binding domain, SHAQKYF class 193 247 IPR006447 GO:0003677
Bach1g02219 653 Gene3D - 192 249 - -
Bach1g02219 653 SMART rrm1_1 474 546 IPR000504 GO:0003723
Bach1g02219 653 SMART rrm1_1 383 455 IPR000504 GO:0003723
Bach1g02219 653 Gene3D - 362 461 IPR012677 -
Bach1g02219 653 MobiDBLite consensus disorder prediction 156 178 - -
Bach1g02219 653 SUPERFAMILY RNA-binding domain, RBD 468 560 IPR035979 GO:0003676
Bach1g02219 653 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 190 250 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach1g02219 Bach-Chr1 34295690 34302137 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach1g02219 465 581 C2H2 Transcription Factor Family AT2G19380 34.426 1.04e-13 72.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Bach1g02219 RRM_1 2.1e-15 CL0221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach1g02219 K12741 - gmx:100776344 531.176