LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bach1g02077	ATGAAGTGTCACGCCCATGGCGACATGGATGTTGATGATGCAGATGCAGTTGTAATGAAGGGGAAAGAGCTGCCTCCGTCGCCGAATTTCTCCGATTATCCAGGGAGAAAATTTTTGGTGATCCATTGTTTTGCAGCTGTCATGCCTTACCTTGTCCGAGAGAATTTATTTATTGGTAATATTGGGGATGCAGCAGAGATCCTCCAAAGTGGTAGTGCTGAAATCACACATATTTTATCTATTCTCAGCTCTGCTTCAATATCATTCTTTTCTGAATGGCGTAATGGCCTAACGATCCCCACAAAGGAAATTAAGAAGGTTTATGTTGGCAGTAGTAACGGTACTGCTCATGATAATTTGGGTGATGGGTCAAGGAGTCCCTTGTCACCGGAGAAGCTTCTGTACTTGTTGGAATATGCTGGAAAAGATTTGAAATTGGTGAGGATGGCTGTGCCTTTGAGGGATACAGAAAATGAAGATTTGTTGGATTACTTGGAGGTTTGCCTAGATTTCATTGATCAGAGTAGAAAAGAAGGCTCCGTTTTGGTTCACTGCTTTGCTGGAGTATCTAGAAGTGCAGCAATCGTTACAGCATATTTGATGAGAACCGAACATCTATCTCAAGAAGATGCACTTGATTCGTTAAGACAGAGCTGTGAATCTGTTTGCCCCAACGATGGATTTCTAGAGCAGTTAAAAATGTTTGAGGAAATGGGTTTCAAGGTCGATCATTCTAGCCCCATATACAAGTGCTTTCGTTTGAAGATACTTGGTGAGAATTATAACTCAGGGTTGGGAATCGACAGTTCTAAACTTGGTGCAGATCCTGGTATGCCTGTTGAAGTTTCAGCTGAGGTGGATGGAGCTCCAAAAGTAGGAAATAGTCGCACTCCTGCATACCGCTGTAAAAAGTGTCGACGGGTGGTTGCATTGCAGGAGCATGTTATTGATCATATTCCAGGTGAAGGTGAGACATCCTTTGACTGGCACAAGCGGAGAAGTGGCAACCCTTTTAGCAAGCCTAATGAATCTGAGTGTTCATCCATATTTATTGAGCCTCTACGATGGATGAAAGCTGTTGAGGAAGGTGCACTGGAGGGAAAGTTGTTCTGCGCTCATTGTGAAGCCCGTTTGGGGTACTTCAATTGGTCAGGCATACAGTGCAGTTGTGGAAGCTGGATAACCCCAGCTTTTCAGCTCCACAAAAGCCGGGTGGATATCAGCCCTGTCTGA	1233	0.4412	MKCHAHGDMDVDDADAVVMKGKELPPSPNFSDYPGRKFLVIHCFAAVMPYLVRENLFIGNIGDAAEILQSGSAEITHILSILSSASISFFSEWRNGLTIPTKEIKKVYVGSSNGTAHDNLGDGSRSPLSPEKLLYLLEYAGKDLKLVRMAVPLRDTENEDLLDYLEVCLDFIDQSRKEGSVLVHCFAGVSRSAAIVTAYLMRTEHLSQEDALDSLRQSCESVCPNDGFLEQLKMFEEMGFKVDHSSPIYKCFRLKILGENYNSGLGIDSSKLGADPGMPVEVSAEVDGAPKVGNSRTPAYRCKKCRRVVALQEHVIDHIPGEGETSFDWHKRRSGNPFSKPNESECSSIFIEPLRWMKAVEEGALEGKLFCAHCEARLGYFNWSGIQCSCGSWITPAFQLHKSRVDISPV	410

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bach1g02077	410	CDD	DSP_DUSP12	51	243	-	-
	Bach1g02077	410	Gene3D	Protein tyrosine phosphatase superfamily	51	258	IPR029021	-
	Bach1g02077	410	ProSitePatterns	Tyrosine specific protein phosphatases active site.	183	193	IPR016130	GO:0016311\|GO:0016791
	Bach1g02077	410	ProSiteProfiles	Tyrosine specific protein phosphatases domain profile.	162	217	IPR000387	GO:0016311\|GO:0016791
	Bach1g02077	410	ProSiteProfiles	Dual specificity protein phosphatase domain profile.	48	241	IPR020422	GO:0006470\|GO:0008138
	Bach1g02077	410	Pfam	Dual specificity phosphatase, catalytic domain	146	237	IPR000340	GO:0008138\|GO:0016311
	Bach1g02077	410	SMART	dsp_5	48	238	IPR020422	GO:0006470\|GO:0008138
	Bach1g02077	410	FunFam	Dual specificity protein phosphatase 12-like	51	258	-	-
	Bach1g02077	410	PANTHER	DUAL SPECIFICITY PROTEIN PHOSPHATASE 12 FAMILY MEMBER	48	406	-	-
	Bach1g02077	410	SUPERFAMILY	(Phosphotyrosine protein) phosphatases II	50	241	IPR029021	-
	Bach1g02077	410	PIRSF	DUSP12	139	410	IPR016278	GO:0006470\|GO:0008138
	Bach1g02077	410	PIRSF	DUSP12	36	93	IPR016278	GO:0006470\|GO:0008138

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bach1g02077	Bach-Chr1	33139417	33144214	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bach1g02077	146	237	Protein tyrosine phosphatase (PTP) family	AT3G06110	39.785	5.58e-16	73.6

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bach1g02077	K14819		-	qsa:O6P43_010054	614.379