Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach1g01888 ATGAGTGGTAGAAGACCCTCGTCGCTTGACCAAGTGGTTCTTCAGAATGATGTTGATTTGCTGAACCCTCCAGCCGAGCTGGAAAAGAGGAAGCACAAGCTCAAGCGTCTTGTTCAGTCGCCAAACTCCTTCTTCATGGATGTTAAGTGTCAGGGATGCTTCAACATAACAACTGTCTTCAGCCACTCTCAGACAGTTGTGGTATGCGGCAATTGCCAGACCGTCTTGTGCCAGCCAACAGGTGGACGGGCTAGGTTGACCGAGGGTTGCTCCTTTAGGAAGAAGGGAGACTAA 294 0.5034 MSGRRPSSLDQVVLQNDVDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRKKGD 97
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach1g01888 97 ProSitePatterns Ribosomal protein S27e signature. 49 81 IPR000592 GO:0003735|GO:0005840|GO:0006412
Bach1g01888 97 Hamap 30S ribosomal protein S27e [rps27e]. 35 95 IPR000592 GO:0003735|GO:0005840|GO:0006412
Bach1g01888 97 PANTHER 40S RIBOSOMAL PROTEIN S27 7 97 IPR000592 GO:0003735|GO:0005840|GO:0006412
Bach1g01888 97 Gene3D - 16 96 IPR023407 -
Bach1g01888 97 SUPERFAMILY Zn-binding ribosomal proteins 41 95 IPR011332 GO:0006412
Bach1g01888 97 Pfam Ribosomal protein S27 41 95 IPR000592 GO:0003735|GO:0005840|GO:0006412
Bach1g01888 97 FunFam 40S ribosomal protein S27 12 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach1g01888 Bach-Chr1 31827408 31829331 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach1g01888 12 97 Cytoplasmic Ribosomal Protein Gene Family AT3G61110 93.023 7.94e-59 173
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach1g01888 K02978 - minc:123230388 175.637
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bach8g01379 8 9452372 9453140 Bach1g01888 1 31827408 31829331 BWGD