Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach1g01813 ATGAACGAATTGGGGTCAAATGCTCAACCTCAGCTACACAGCTTTCGAACTCTCGGCGGAGCTGTCAAAATGGTGAAATACTCAAGAGAACCCGACAACCCAACAAAGTCATGCAAAGCTCAGGGTCAGGATCTGCGCGTCCATTTTAAGAACACAAGGGAAACAGCCTTTGCAATCAGGAAGTTGCCTTTGGCAAAGGCTAAAAGGTATCTGGAAGACGTGCTCGCCCACAAGCAAGCTATCCCCTTCCGACGGTTTTGTCGTGGTGTTGGTCGCACTGCTCAAGCAAAGAACCGTCAATCCAATGGTCAAGGACGCTGGCCTGTCAAGTCAGCCAGGTTTATCCTCGATTTGCTGAAAAATGCCGAGAGCAATGCAGAAGTTAAAGGCCTTGATGTCGATGCGCTATACATTTCCCATATCCAGGTGAACCAAGCTCAGAAACAGAGGCGCCGTACCTACCGTGCTCATGGGAGAATTAATCCATACATGTCATCACCATGCCACATTGAGTTGATTTTGTCTGAAAAGGAGGAGCCAGTTCAAAAGGAGCCTGAGACACAGTTGGCTCCCAGGAAATCCAACAACGCGTAGACTTGTGTTGCGTCTCGGTGCTTATTTTTGAGTTGATAATATTTTCCCTTAAATTCCTTTGATTTTGTATTCTCTGTTAAGGAAGATCTTATACTTAAATATCTGTCATGCATAATTTGACTTTGAGACCATTTTTA 731 0.4528 MNELGSNAQPQLHSFRTLGGAVKMVKYSREPDNPTKSCKAQGQDLRVHFKNTRETAFAIRKLPLAKAKRYLEDVLAHKQAIPFRRFCRGVGRTAQAKNRQSNGQGRWPVKSARFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVQKEPETQLAPRKSNNA 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach1g01813 197 PANTHER 60S RIBOSOMAL PROTEIN L17 24 194 IPR005721 GO:0003735|GO:0006412|GO:0015934
Bach1g01813 197 Gene3D Ribosomal protein L22/L17 24 197 IPR036394 GO:0003735|GO:0005840|GO:0006412
Bach1g01813 197 MobiDBLite consensus disorder prediction 178 197 - -
Bach1g01813 197 Hamap 50S ribosomal protein L22 [rplV]. 23 177 IPR005721 GO:0003735|GO:0006412|GO:0015934
Bach1g01813 197 CDD Ribosomal_L22 38 174 IPR001063 GO:0003735|GO:0005840|GO:0006412
Bach1g01813 197 Pfam Ribosomal protein L22p/L17e 40 175 IPR001063 GO:0003735|GO:0005840|GO:0006412
Bach1g01813 197 NCBIfam 50S ribosomal protein L22 27 177 IPR005721 GO:0003735|GO:0006412|GO:0015934
Bach1g01813 197 SUPERFAMILY Ribosomal protein L22 24 177 IPR036394 GO:0003735|GO:0005840|GO:0006412
Bach1g01813 197 ProSitePatterns Ribosomal protein L22 signature. 150 174 IPR018260 GO:0003735|GO:0005840|GO:0006412
Bach1g01813 197 FunFam 60S ribosomal protein L17 24 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach1g01813 Bach-Chr1 31268076 31271172 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach1g01813 24 197 Cytoplasmic Ribosomal Protein Gene Family AT1G27400 87.356 4.27e-114 320
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach1g01813 K02880 - qsa:O6P43_008813 332.413