Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach1g01717 ATGGACTCACCCATAAACGACCCCGTTGTCGATGGAGAGTCTAACGACGTTAGGGCCTTTGGTCACAGAGAAGAAGACGACGACAAGTCCCAACCTTTTACCGGCGACGGAGCCAGTCCCGGAAAAATATTCATAGGTGGTTTAGCGAGAGAAACGACAATTGACCAATTTATCAAGCATTTTGGTGACTATGGCGAGATTACGGATTCGGTAATAATGAAGGATCGGAAAACTGGGCAACCTCGTGGATTTGGGTTTATAACTTACGCAGATCCCTCTGTAGTTGATAAAGTTATTGAAGACACTCATATTATCAATGGCAAGCAAGTTGAAATTAAGCGGACCATACCAAGGGGAGCTATTGGGTCTAAGGATTTCAGGACAAAGAAAATTTTTGTGGGTGGAATTCCTTCAACTGTGACTGAAGATGAGTTTAGAGACTTCTTTACCCACTATGGAGAGGTCAAAGATCACCAGATAATGCGGGATCATTCCACTAATCGTTCTCGTGGCTTTGGGTTTATCACCTTCGAGTCTGAGGAAGCTGTCGAAGATCTCTTAGCTAAGGGGAACAAGATTGAGTTTGCCGGGACTCAGGTGGAAATCAAGAAGGCTGAGCCAAAGAAGCCAAACCCGCCACCACCTTCCAAACGCTATAATGACTCAAGATCTTCATTTAGTGGTGGATATGGAGATAGTTATGATGGATTTAATAGTAGCTTTGGTGTCGGGGGTTACAGGTCAGGTGGTGTCTATGGTGGTAGGGGTGGTGCTTATGGTGGCTATGGAAGTGAATTTGGTGGATATGGATATGCTGGTGCCATGGGGCCTTATAGAGGAGACCCTTCCCTTGGATACTCTGGACGTTATGCAGGAGGCTTTAGCCGAGGTTATGATTTTGGAGGTTATGGTGGACCTAGTGACAGTTATGGGGGATATGGTGGTGGCGGTGGTCCTTCTGGTGGTGCCTATGGAGGTGGCTATGATGCCAGCTTAGGGGGTCGATATGCAGGAGGCAGTGGAGGTTCCTTTTATGGAAGTAGAGGAGGATACGGAGGAGGTGCTGGGAGTGGTCGATATCATCCTTATGGAAGTTAG 1098 0.469 MDSPINDPVVDGESNDVRAFGHREEDDDKSQPFTGDGASPGKIFIGGLARETTIDQFIKHFGDYGEITDSVIMKDRKTGQPRGFGFITYADPSVVDKVIEDTHIINGKQVEIKRTIPRGAIGSKDFRTKKIFVGGIPSTVTEDEFRDFFTHYGEVKDHQIMRDHSTNRSRGFGFITFESEEAVEDLLAKGNKIEFAGTQVEIKKAEPKKPNPPPPSKRYNDSRSSFSGGYGDSYDGFNSSFGVGGYRSGGVYGGRGGAYGGYGSEFGGYGYAGAMGPYRGDPSLGYSGRYAGGFSRGYDFGGYGGPSDSYGGYGGGGGPSGGAYGGGYDASLGGRYAGGSGGSFYGSRGGYGGGAGSGRYHPYGS 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach1g01717 365 FunFam Heterogeneous nuclear ribonucleoprotein 1 121 242 - -
Bach1g01717 365 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 129 207 IPR000504 GO:0003723
Bach1g01717 365 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 131 200 IPR000504 GO:0003723
Bach1g01717 365 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 43 110 IPR000504 GO:0003723
Bach1g01717 365 SUPERFAMILY RNA-binding domain, RBD 37 119 IPR035979 GO:0003676
Bach1g01717 365 MobiDBLite consensus disorder prediction 1 39 - -
Bach1g01717 365 SMART rrm1_1 130 203 IPR000504 GO:0003723
Bach1g01717 365 SMART rrm1_1 42 113 IPR000504 GO:0003723
Bach1g01717 365 Gene3D - 41 120 IPR012677 -
Bach1g01717 365 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 41 117 IPR000504 GO:0003723
Bach1g01717 365 Gene3D - 122 236 IPR012677 -
Bach1g01717 365 SUPERFAMILY RNA-binding domain, RBD 126 236 IPR035979 GO:0003676
Bach1g01717 365 FunFam Heterogeneous nuclear ribonucleoprotein 1 40 120 - -
Bach1g01717 365 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 23 364 - -
Bach1g01717 365 MobiDBLite consensus disorder prediction 16 32 - -
Bach1g01717 365 MobiDBLite consensus disorder prediction 199 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach1g01717 Bach-Chr1 30601141 30603750 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach1g01717 41 318 Eukaryotic Initiation Factors Gene Family AT1G71770 22.569 9.10e-12 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach1g01717 K12741 - gmx:100813165 428.713