Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach1g01362 ATGGCCGACATAACTATTACTAAATACTCGCATATGAATACGCGACTCGAGGTACAATTGGAGTTTCCGAAGATGCAAATCTTTGTGAAAACCCTCACCGGCAAGACTATTACTCTTGAAGTTGAAAGTTCGGATACCATTGACAATGTGAAGGCAAAGATCCATGACAAAGAAGGCATCTCACCAGATCAGCAGCGTCTTATCTTTGCAGGGAAGCAGCTTGAGGATGGGCGAACTCTAGCTGACTATAACATCCAGAAAGAGTCTACCCTCCACCTTGTTCTTCGGCTTCGTGGTGGTATGCAAATTTTTGTCAAAACCCTCACTGGGAAGACCATCACCCTCGAGGTTGAGAGCTCGGACACCATTGACAATGTCAAGGCCAAGATCCAAGACAAGGAGGGCATTCCTCCTGACCAGCAAAGACTCATTTTTGCTGGTAAGCAGCTAGAAGATGGGCGAACCCTAGCTGACTATAATATTCAGAAAGAATCCACCCTCCACCTCGTACTTCGGCTTCGTGGCGGCATGCAAATTTTCGTCAAAACCCTCACTGGAAAGACCATCACCCTTGAGGTTGAGAGCTCTGACACTATTGATAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCTCCTGACCAGCAGAGACTCATTTTCGCTGGTAAGCAGCTTGAGGATGGCCGAACACTTGCTGACTATAACATTCAAAAGGAGTCAACGCTCCACCTTGTTCTGCGGCTTCGAGGTGGAATGCAGATCTTTGTGAAGACCCTCACTGGAAAAACTATTACCTTGGAAGTTGAGAGTTCAGATACTATAGACAATGTGAAGGCGAAGATCCAAGACAAAGAGGGAATCCCACCTGACCAACAAAGGTTGATCTTTGCTGGAAAACAGTTGGAGGATGGAAGGACTTTGGCTGATTACAATATTCAAAAAGAATCTACTCTTCACCTCGTTCTGCGACTTCGTGGTGGGATCCAAATCTTTGTGAAGACCCTTACAGGGAAGACTATCACCTTGGAAGTTGAGAGTTCAGACACAATCGATAATGTGAAATCTAAGATCCAAGACAAGGAGGGAATCCCACCAGATCAGCAGAGGCTGATATTTGCAGGAAAGCAATTAGAGGATGGAAGGACACTGGCCGATTACAATATCCAGAAAGAGTCGACCCTTCATCTTGTTCTGCGTCTTCGTGGTGGTTTTTAG 1218 0.4589 MADITITKYSHMNTRLEVQLEFPKMQIFVKTLTGKTITLEVESSDTIDNVKAKIHDKEGISPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach1g01362 405 CDD Ubl_ubiquitin 329 404 - -
Bach1g01362 405 ProSiteProfiles Ubiquitin domain profile. 25 100 IPR000626 GO:0005515
Bach1g01362 405 FunFam Polyubiquitin 3 177 252 - -
Bach1g01362 405 FunFam Polyubiquitin Ubiquitin 25 100 - -
Bach1g01362 405 ProSitePatterns Ubiquitin domain signature. 203 228 IPR019954 -
Bach1g01362 405 ProSiteProfiles Ubiquitin domain profile. 329 404 IPR000626 GO:0005515
Bach1g01362 405 PRINTS Ubiquitin signature 132 152 IPR019956 -
Bach1g01362 405 PRINTS Ubiquitin signature 111 131 IPR019956 -
Bach1g01362 405 PRINTS Ubiquitin signature 153 174 IPR019956 -
Bach1g01362 405 Pfam Ubiquitin family 331 402 IPR000626 GO:0005515
Bach1g01362 405 Pfam Ubiquitin family 179 250 IPR000626 GO:0005515
Bach1g01362 405 Pfam Ubiquitin family 255 326 IPR000626 GO:0005515
Bach1g01362 405 Pfam Ubiquitin family 103 174 IPR000626 GO:0005515
Bach1g01362 405 Pfam Ubiquitin family 27 98 IPR000626 GO:0005515
Bach1g01362 405 CDD Ubl_ubiquitin 25 100 - -
Bach1g01362 405 SUPERFAMILY Ubiquitin-like 328 404 IPR029071 -
Bach1g01362 405 SUPERFAMILY Ubiquitin-like 252 328 IPR029071 -
Bach1g01362 405 SMART ubq_7 253 324 IPR000626 GO:0005515
Bach1g01362 405 SMART ubq_7 25 96 IPR000626 GO:0005515
Bach1g01362 405 SMART ubq_7 329 400 IPR000626 GO:0005515
Bach1g01362 405 SMART ubq_7 101 172 IPR000626 GO:0005515
Bach1g01362 405 SMART ubq_7 177 248 IPR000626 GO:0005515
Bach1g01362 405 ProSitePatterns Ubiquitin domain signature. 355 380 IPR019954 -
Bach1g01362 405 CDD Ubl_ubiquitin 177 252 - -
Bach1g01362 405 ProSitePatterns Ubiquitin domain signature. 279 304 IPR019954 -
Bach1g01362 405 FunFam Polyubiquitin 3 101 176 - -
Bach1g01362 405 SUPERFAMILY Ubiquitin-like 100 176 IPR029071 -
Bach1g01362 405 ProSiteProfiles Ubiquitin domain profile. 101 176 IPR000626 GO:0005515
Bach1g01362 405 PANTHER UBIQUITIN 253 332 - -
Bach1g01362 405 ProSiteProfiles Ubiquitin domain profile. 177 252 IPR000626 GO:0005515
Bach1g01362 405 ProSiteProfiles Ubiquitin domain profile. 253 328 IPR000626 GO:0005515
Bach1g01362 405 ProSitePatterns Ubiquitin domain signature. 127 152 IPR019954 -
Bach1g01362 405 Gene3D - 253 328 - -
Bach1g01362 405 Gene3D - 177 252 - -
Bach1g01362 405 Gene3D - 329 405 - -
Bach1g01362 405 Gene3D - 101 176 - -
Bach1g01362 405 Gene3D - 19 100 - -
Bach1g01362 405 FunFam Polyubiquitin 3 329 404 - -
Bach1g01362 405 CDD Ubl_ubiquitin 101 176 - -
Bach1g01362 405 FunFam Polyubiquitin 3 253 328 - -
Bach1g01362 405 SUPERFAMILY Ubiquitin-like 176 252 IPR029071 -
Bach1g01362 405 CDD Ubl_ubiquitin 253 328 - -
Bach1g01362 405 SUPERFAMILY Ubiquitin-like 13 100 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach1g01362 Bach-Chr1 27081313 27083929 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach1g01362 329 405 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 96.104 2.75e-46 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach1g01362 K08770 - msin:131220086 732.25