Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach1g01237 ATGCATGGATTCAAGAAGAGAATCATAGTGGAAAAAAGAAAATCCCAAGAAACATTAGTACGTGCAGATTCATACAGCATGGGAAGAGGGAAGGTGGTTCTGGAGAGGATAGAGAACAAGACCAACCGGCAAGTAACCTTCTCGAAGCGCAGGAATGGACTGCTTAAGAAAGCCTATGAGCTTTCTGTGCTATGTGATGCTGAAGTTGCCCTTATCCTTTTTTCTAGCCGTGGCAAGCTTTTCCAGTTCAGCAGCTCTGACATAAACAGAATCATTGAGCGGTATCACCAATGTTGTTTCATCTCACAAGCAAGCAACATGGCTGAAAATGAACCTCAGAACTTGCAGCAGGAGCTGTTAAAATTAAAACTCAAATATGAGTCTCTTGAGCGCACAGAAAGGAATATGCGTGGAGAGAACCTTGAACCACTTAGCATGAAGGAGTTGCAGAGTCTTGAGAAACAGCTGGAAAGAACGCTCTCACAAGCTAGACAGCGCAAGGAGCACAAGCTTACAGAGCTTAACAAAGAACTCAAGTCCAAGCTTGAGGAAGTAGATGAATATGCCCAAATATTCGAAAGCGCTTTGGTCGCCAGAAACAATCGAGCTATGGCGCATGCTGTACAGGACAATTGTTTTGAGTCTGGGACAACCGTGCCAATAAAGTAG 669 0.441 MHGFKKRIIVEKRKSQETLVRADSYSMGRGKVVLERIENKTNRQVTFSKRRNGLLKKAYELSVLCDAEVALILFSSRGKLFQFSSSDINRIIERYHQCCFISQASNMAENEPQNLQQELLKLKLKYESLERTERNMRGENLEPLSMKELQSLEKQLERTLSQARQRKEHKLTELNKELKSKLEEVDEYAQIFESALVARNNRAMAHAVQDNCFESGTTVPIK 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach1g01237 222 Coils Coil 146 191 - -
Bach1g01237 222 CDD MADS_MEF2_like 28 98 IPR033896 GO:0000977|GO:0045944
Bach1g01237 222 Gene3D - 39 111 IPR036879 GO:0003677|GO:0046983
Bach1g01237 222 FunFam MADS-box transcription factor 1 39 110 - -
Bach1g01237 222 PRINTS MADS domain signature 64 85 IPR002100 GO:0003677|GO:0046983
Bach1g01237 222 PRINTS MADS domain signature 49 64 IPR002100 GO:0003677|GO:0046983
Bach1g01237 222 PRINTS MADS domain signature 29 49 IPR002100 GO:0003677|GO:0046983
Bach1g01237 222 ProSiteProfiles MADS-box domain profile. 27 87 IPR002100 GO:0003677|GO:0046983
Bach1g01237 222 Coils Coil 119 139 - -
Bach1g01237 222 ProSiteProfiles K-box domain profile. 112 202 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bach1g01237 222 PANTHER SERUM RESPONSE FACTOR HOMOLOG 27 176 - -
Bach1g01237 222 SUPERFAMILY SRF-like 28 116 IPR036879 GO:0003677|GO:0046983
Bach1g01237 222 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 36 83 IPR002100 GO:0003677|GO:0046983
Bach1g01237 222 Pfam K-box region 107 187 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bach1g01237 222 ProSitePatterns MADS-box domain signature. 29 83 IPR002100 GO:0003677|GO:0046983
Bach1g01237 222 SMART madsneu2 27 86 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach1g01237 Bach-Chr1 25729028 25733611 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach1g01237 27 183 MADS-box Gene Family AT2G45650 57.895 2.64e-58 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Bach1g01237 K-box 2.6e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach1g01237 K09264 - qsu:112034717 206.068
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bach1g01237 1 25729028 25733611 Bach1g01237 1 25729028 25733611 ECH