Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach1g01122 ATGGGTTCGGGTTCAGGGTTGATGGATGCAGGTCAAACCAGGAGCACACCCGATCCAAGCCACTCGCAGGGGCCGAACATTTTCAATGGCCCGAGGTCACCCAGCTTTGGGTCGGTAACTAGCCGGCCTCACACCATCTCCCAAGATGGGTCTGCTACGAGCAACGCAGTGCCGTCTCAACCAAGGGCTCAGGGACGTCACCTAGCCGTGGGTGAGAAATTGGAGGAGCAGCTGGCGTTAATGGACGACAGTGGAGAAACAGAGGAACCGGGGACCGAAGGAGAAAAGTCAGAGGCAAAGCTGGCTTGGCTTGACGCCGGGGAAAAAATCAAAGGGGTAGCCGACAATCAAATTGAGGTCAATGAGGTGAGTAAGGAGATGGATTTAGATCTAATCAAGCAAAACAGTCAGGTGGAGAGGGTAATTGCAGGTAGGATCAGTAGAGATAACTCTGAGAATGTCATTCTTGAATACTTGGTCAAATGGCAAGGACTATCCTATGCAGAAGCAACATGGGAGAAGGATGTTGATATTGCTTTCGTTCAACATGCCATTGACAAGTATAAGGCTTGTGAGGCTGCTATGTCAGTTCAAGGAAAGATGGTAGATCCCCAACGCAAGAAGAGCAAAGCAAGTTTGCAGAAGCTTGATAAACAGCCTGAATGGTTGAAGGGTGGAAGGCTCCGTGATTATCAACTTGAGGGTTTGAATTTTCTTGTTAACAGTTGGAAAAATGATACAAATGTCATTTTAGCTGATGAAATGGGTCTTGGGAAAACTGTCCAGTCGGTATCAATGCTTGGTTTTCTACAGAATGGCCAGCAAATCCATGGTCCCTTTCTTGTGGTTGTCCCATTGTCCACGTTATCAAACTGGGCCAAAGAATTCTGGAAGTGGCTTCCTGATATGAATATTATTGTGTATGTTGGTACACGTGCAAGTCGAGGGGTTTGCCAACAATATGAATTTTATAATGACAAAAAGGTTGGGAGGCCTATAAAATTTAATGCATTGTTGACTACATATGAAGTTATTCTGAAGGATAAGGCTGTTCTCTCCAAAATCAAATGGAATTATCTTATGGTTGATGAGGCCCATAGACTAAAAAATAGCGAGGCACAGTTGTACACAACACTCTTAGAATTTAGCACCAAGAACAAGCTGCTTATCACTGGTACTCCCCTACAGAATAGCGTTGAGAAGCTATGGGCTTTGCTTCACTTCCTTGATCCTGATAAGTTTAAGAGCAAGGATGACTTCGTTCAAAACTACAAGAGTCTAAGTTCATTCAATGAAAATGAGCTTACTGATCTTCATATGGAATTGAGGCCTCACATACTCCGAAGAGTTATCAAAGATGTGGAGAAATCTTTAGCCCCCAAAATTGAGCGTATTATAAGGGTTGAGATGTCTCTTCTTCAGAAACAGTATTATAAATGGATTTTAGAACGCAACTTTCATGATTTGAACAAAGGAGATCGAGGGAATCAGGGTTCTCTTCTTAATATTGTGGTAGAATTAAAGAAGGGCTGCAATCACCCCTTCCTATTTGAAAGTGCTGACCATGGTTATGGTGGGGACTCAGGAAGTAGTGACAGCATTAAAGTGGAGAGAACTGTCTTTAGCAGTGGGAAGCTTGTCATACTTGATAAGCTGCTGGTTCGATTGCATGAGACAAAGCATCGTGTTCTGATTTTCTCTCAGATGGTCGGGATGTTGGATATGCTGGCAGACTATATGTCACTTAGAGGGTACCAATTCCAGAGGCTTGATGGCAGTACAAAGGCTGAGTTGCGGCATCAGGCTATGGACCATTTTAATGCACCTGGTAGTGATGATTTCTGCTTCCTCCTTTCAACACGAGCAGGGGGTCTTGGCATAAACCTTGCCACAACAGACTGTTATAATATTTGA 1914 0.4399 MGSGSGLMDAGQTRSTPDPSHSQGPNIFNGPRSPSFGSVTSRPHTISQDGSATSNAVPSQPRAQGRHLAVGEKLEEQLALMDDSGETEEPGTEGEKSEAKLAWLDAGEKIKGVADNQIEVNEVSKEMDLDLIKQNSQVERVIAGRISRDNSENVILEYLVKWQGLSYAEATWEKDVDIAFVQHAIDKYKACEAAMSVQGKMVDPQRKKSKASLQKLDKQPEWLKGGRLRDYQLEGLNFLVNSWKNDTNVILADEMGLGKTVQSVSMLGFLQNGQQIHGPFLVVVPLSTLSNWAKEFWKWLPDMNIIVYVGTRASRGVCQQYEFYNDKKVGRPIKFNALLTTYEVILKDKAVLSKIKWNYLMVDEAHRLKNSEAQLYTTLLEFSTKNKLLITGTPLQNSVEKLWALLHFLDPDKFKSKDDFVQNYKSLSSFNENELTDLHMELRPHILRRVIKDVEKSLAPKIERIIRVEMSLLQKQYYKWILERNFHDLNKGDRGNQGSLLNIVVELKKGCNHPFLFESADHGYGGDSGSSDSIKVERTVFSSGKLVILDKLLVRLHETKHRVLIFSQMVGMLDMLADYMSLRGYQFQRLDGSTKAELRHQAMDHFNAPGSDDFCFLLSTRAGGLGINLATTDCYNI 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach1g01122 637 CDD CD2_tandem 134 190 - -
Bach1g01122 637 ProSiteProfiles Chromo and chromo shadow domain profile. 136 188 IPR000953 -
Bach1g01122 637 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 240 412 IPR014001 -
Bach1g01122 637 Pfam Helicase conserved C-terminal domain 545 631 IPR001650 -
Bach1g01122 637 SUPERFAMILY Chromo domain-like 117 190 IPR016197 -
Bach1g01122 637 Gene3D - 219 458 IPR038718 -
Bach1g01122 637 MobiDBLite consensus disorder prediction 1 61 - -
Bach1g01122 637 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 109 633 - -
Bach1g01122 637 Pfam SNF2-related domain 246 516 IPR000330 GO:0005524|GO:0140658
Bach1g01122 637 CDD SF2_C_SNF 535 629 - -
Bach1g01122 637 Gene3D - 459 633 IPR027417 -
Bach1g01122 637 FunFam protein CHROMATIN REMODELING 5 isoform X2 138 190 - -
Bach1g01122 637 SMART chromo_7 134 193 IPR000953 -
Bach1g01122 637 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 452 631 IPR027417 -
Bach1g01122 637 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 217 449 IPR027417 -
Bach1g01122 637 FunFam Photoperiod-independent early flowering 1 198 472 - -
Bach1g01122 637 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 548 637 IPR001650 -
Bach1g01122 637 Gene3D - 121 190 - -
Bach1g01122 637 MobiDBLite consensus disorder prediction 1 67 - -
Bach1g01122 637 SMART ultradead3 224 423 IPR014001 -
Bach1g01122 637 Pfam Chromo (CHRromatin Organisation MOdifier) domain 137 189 IPR023780 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach1g01122 Bach-Chr1 24345522 24347435 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach1g01122 561 630 RAD5 or RAD16-like Gene Family AT5G43530 32.857 3.08e-06 48.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Bach1g01122 SNF2_N 8.3e-61 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach1g01122 K11367 - gmx:100808039 928.702