Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach1g01008 ATGTCTGGGAAGGAAGAGAATCGAATATTTGTTGGTGGGTTATCGTGGGAGGTCACGCAGCGTCAGCTCGAGCATGTGTTTGGCCGTTACGGGAAAATCGTTGAAACTCAGATCATGATGGAGAGAGAAACTGGCCGTCCACGTGGATTTGGGTTTATTACATATGCAGATCGTAGGGGAATGGAGGATGCAATCAAGGAAATGCATGGACGAGAGTTTGGTGACCGCATCATTACTGTCAATAAGGCCCAGCCCAAAATGGGGGGAGATGATTTAGACTATGGTTATAGGGGTGGCTACTCTGCCGGTGGTAGGGGAAGCTATGGGGTGGGAGACAGGGTTGGACAGGATGATTGCTTCAAATGTGGGCGTCCAGGTCACTGGGCTCGAGATTGTCCTTTGGCAGGAGGTGGTAGCTCGTTTTCTTCACGTCCTAGGTTTGGAGGTGCTGGTGGCCGTGGAGACCGCCTTAGTGAACGTGATCGATATGCTGATGATCGATATGATGGAGGACGTTATGGAGAGAGGGATCGCTTTGACAGCCGGGATCACAAATATGGCAGCCGTGATCTCTATGCCAGTGACAGGTATCAAGCTAGTGGGGATCGTTTTGCGAGTGATAGATACGGTCCTTCAGATCGTTACCCACAAAATGGATATGGCAAAGATAGAGGGAATGATAAGTATGGTGGTCCTCGAGGAGGTACCGATAGGTATGGAAGTGGAATGCCAGCACGAGAAGAAGGACGAAGTTACAGGGAAAGGCATGGTCCTTATGTCCGTCCAAGCAGGGGTGGTCGCCAATCTTCCTTTGGTAGATATTAG 825 0.5018 MSGKEENRIFVGGLSWEVTQRQLEHVFGRYGKIVETQIMMERETGRPRGFGFITYADRRGMEDAIKEMHGREFGDRIITVNKAQPKMGGDDLDYGYRGGYSAGGRGSYGVGDRVGQDDCFKCGRPGHWARDCPLAGGGSSFSSRPRFGGAGGRGDRLSERDRYADDRYDGGRYGERDRFDSRDHKYGSRDLYASDRYQASGDRFASDRYGPSDRYPQNGYGKDRGNDKYGGPRGGTDRYGSGMPAREEGRSYRERHGPYVRPSRGGRQSSFGRY 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach1g01008 274 MobiDBLite consensus disorder prediction 153 186 - -
Bach1g01008 274 ProSiteProfiles Zinc finger CCHC-type profile. 119 133 IPR001878 GO:0003676|GO:0008270
Bach1g01008 274 SMART rrm1_1 8 81 IPR000504 GO:0003723
Bach1g01008 274 SUPERFAMILY Retrovirus zinc finger-like domains 106 136 IPR036875 GO:0003676|GO:0008270
Bach1g01008 274 MobiDBLite consensus disorder prediction 198 274 - -
Bach1g01008 274 Pfam Zinc knuckle 119 133 IPR001878 GO:0003676|GO:0008270
Bach1g01008 274 MobiDBLite consensus disorder prediction 139 186 - -
Bach1g01008 274 Gene3D - 115 146 - -
Bach1g01008 274 MobiDBLite consensus disorder prediction 243 261 - -
Bach1g01008 274 SUPERFAMILY RNA-binding domain, RBD 4 109 IPR035979 GO:0003676
Bach1g01008 274 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 78 IPR000504 GO:0003723
Bach1g01008 274 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 85 IPR000504 GO:0003723
Bach1g01008 274 FunFam glycine-rich RNA-binding protein RZ1C 1 115 - -
Bach1g01008 274 PANTHER SRA STEM-LOOP-INTERACTING RNA-BINDING PROTEIN, MITOCHONDRIAL 4 266 - -
Bach1g01008 274 Gene3D - 2 114 IPR012677 -
Bach1g01008 274 SMART c2hcfinal6 118 134 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach1g01008 Bach-Chr1 22558425 22563256 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach1g01008 9 88 C2H2 Transcription Factor Family AT2G19380 38.750 2.96e-12 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach1g01008 - - gmx:100809519 401.749