LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bach1g00806	ATGGTGGGTATGGACGATGCTCGAGCTCCGTGCCAGCTTTCCGGTAACCGGAAAATATTCTGGCGTTCGACTTCTTGGTCATCTTCCCGTTCCGCCGCTCACAATCCGGACGGTGAGGAAAAGGATTTTGCAGATCCAGATGGCAATATTGGCAATATCAATGGGCAAACTCGTAGGTATCCTCCCGCTCCGTTAACCCCTCGATCGCAACATAATTGCAAGGCTCGGTCTAGTTTGCCGCCGTTACAGCCCCTGTCGATTGCTCGGAGGAGCTTGGATGAGTGGCCCAAGGCAAGTTCGGATGATATCGGTGAGTGGCCAGTGCCACGTCCCCCTACACCATGTGGAAGAGGAAGCGGAGAAAGGTTGAAGCTTGATTTGTCATCAATTCAGAAAAACCCAGATAAGAGTGGAGGGCTTGTGAAGAGAGACAAAATTGCTTTCTTTGATAAAGAATGCTCAAAAGTTGGTGAACATATATACCTTGGTGGAGACGCTGTTGCTAGAGATAGGGATATACTGAAACAGAATGGGATTACCCATATTCTGAACTGTGTAGGTTTTGTTTGTCCCGAGTACTTCAAAGCAGATTTTGTGTACAGAACATTGTGGTTGCAAGATAGTCCATCAGAGGATATTACCAGTATTCTGTATGACGTGTTTGATTATTTTGAAGATGTTAGGGAGCAAGGTGGAAGGGTGTTTGTGCATTGTTGCCAAGGGGTATCTAGGTCCACGTCTCTGGTGATTGCATACCTTATCTGGAGGGAAGGGCAGAGTTTTGACGATGCTTTTCAGTATGTGAAAGCAGCGAGAGGTATTGCTGATCCAAATATGGGTTTTGCTTGCCAATTGTTACAGTGCCAGAAAAGGGTCCATGCATTTCCGCTTAGCCCAAGCTCTCTGCTGAGAATGTATAGAATTGCCCCACACTCCCCATATGATCCTTTGCATCTTGTCCCAAAAATGTTAATTGATCCTTCTTCATCTGCTCTGGATTCCAGAGGTGCATTTATTGTTCATATACCTTCTGCAATATATGTTTGGATTGGTAAAAATTGTGAGGCCATCATGGAAAGGGATGCCAGAGGGGCTGTGGGTCAGATTGTTCGTTACGAGAGAGTGCAGGGCCCAATTATAATGATAAAGGAGGATGAAGAACCATCATGCTTTTGGGATGCCTTTTCGAAATTTTTGCCTTTGATGGACAAATCTGGCAATAGACTAGAAACTAACAAATCAAGTATTAAGATTTTTCCAGGTGAGAGAAAGGTGGACTCATATGATGTTGAATTTGAAGTGTTCCAGAAAGCAATCATGGGAGGTTTTGTGCCTCCATTTGCATCATCTGAGGATGAACACGAAACCCATCTTCCTGCCAGAGAGAGCAGTTGGAGTGTACTAAGGCGTAAATTTGCCTCTGCCAATATGAAGGAGTTTGTCTCAGCACCTAAGTTAGCCTTTTCGAGGGTTTATTCTGACTCCATGTTGTGCATCTTTTCATCAACACATTCATCACCATCCTCATCGTTGTCATCATCATCATCATCATCTTCTTTAACATCTTCTTCTTCACCTGCATACCTCTCTCCAGATTCAATTTCTTCTGATTCAAGCACTAATTCAAAGTATTTTTCAGAATCGTCCCTGGATTCTCCATTAGCAGCTTTATCTTCCATTCCAATATCTTCATCCATGTCTAACCTTTCTAACTTGTCCCTCCTTTCATCCGGTTGTACTTCTCAACCAGTATCTAATAATGCAGAAGTTCATTGTGTCAATTTGACATCACAACGTTGTTCTCTTTCTGCCTCTTCCCTATTGAAAAAACCTTCAACTTCACTTGCTGAGCGCAGAGGTAGTTTGTCAAAGTCTTTGAAGCTGCCAGGAATGAATGATAAGACCAGAGTGATTAATAGATCATCAACCTTTCATGCTAGTCGAGAAGATGATGTCATTTTGAATAGCAGTGTTAACTGTTCACATCAGTCAGATGGTATAGACCGTTTATCTGAGTCCAACAACTTTGTTGAGAGCAGAGTAAACTCATTTGAAAAAGCAGCTACTTTTACCAAGAACTGTGGTGAATCTTGGGTAGATAGTTCCTCAAAAGAAGAAGTCAAGTCTGGTTCATGTAATGGAATTGATGGAAGTGCTTTATTACGATGTAATATGACACAAACTTTGGTATATCGCTGGCCTAGTTTAGAGAAGATTGCAACATTTGGTGCAAGTCATATGGATTCTAAAGCTGCTTTTGTTATTTTCTCTCTAAGTACAAGTAAAAATGCAGAAAGCATTTTATACTTTTGGGTGGGGAGGTCATTCAACTGTGATATATCTCAGGTTCAGTTAGGTAGTGATAGAAAGTCAGATTACCTAGGAGTGAATGACTGGAATCAAATTGGTTGTGATGTCCTCGCTCAGTTCAACTTGCGGAAGGACACAGTCATTAAGATTGTTAAAGAAAATGAAGAACCAGCAGAGTTCCTAGCTTTTCTGAGTAAATTGTAG	2514	0.4208	MVGMDDARAPCQLSGNRKIFWRSTSWSSSRSAAHNPDGEEKDFADPDGNIGNINGQTRRYPPAPLTPRSQHNCKARSSLPPLQPLSIARRSLDEWPKASSDDIGEWPVPRPPTPCGRGSGERLKLDLSSIQKNPDKSGGLVKRDKIAFFDKECSKVGEHIYLGGDAVARDRDILKQNGITHILNCVGFVCPEYFKADFVYRTLWLQDSPSEDITSILYDVFDYFEDVREQGGRVFVHCCQGVSRSTSLVIAYLIWREGQSFDDAFQYVKAARGIADPNMGFACQLLQCQKRVHAFPLSPSSLLRMYRIAPHSPYDPLHLVPKMLIDPSSSALDSRGAFIVHIPSAIYVWIGKNCEAIMERDARGAVGQIVRYERVQGPIIMIKEDEEPSCFWDAFSKFLPLMDKSGNRLETNKSSIKIFPGERKVDSYDVEFEVFQKAIMGGFVPPFASSEDEHETHLPARESSWSVLRRKFASANMKEFVSAPKLAFSRVYSDSMLCIFSSTHSSPSSSLSSSSSSSSLTSSSSPAYLSPDSISSDSSTNSKYFSESSLDSPLAALSSIPISSSMSNLSNLSLLSSGCTSQPVSNNAEVHCVNLTSQRCSLSASSLLKKPSTSLAERRGSLSKSLKLPGMNDKTRVINRSSTFHASREDDVILNSSVNCSHQSDGIDRLSESNNFVESRVNSFEKAATFTKNCGESWVDSSSKEEVKSGSCNGIDGSALLRCNMTQTLVYRWPSLEKIATFGASHMDSKAAFVIFSLSTSKNAESILYFWVGRSFNCDISQVQLGSDRKSDYLGVNDWNQIGCDVLAQFNLRKDTVIKIVKENEEPAEFLAFLSKL	837

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bach1g00806	837	Pfam	Dual specificity phosphatase, catalytic domain	160	290	IPR000340	GO:0008138\|GO:0016311
	Bach1g00806	837	SUPERFAMILY	(Phosphotyrosine protein) phosphatases II	147	293	IPR029021	-
	Bach1g00806	837	Gene3D	Protein tyrosine phosphatase superfamily	139	294	IPR029021	-
	Bach1g00806	837	MobiDBLite	consensus disorder prediction	504	535	-	-
	Bach1g00806	837	CDD	DSP	153	287	-	-
	Bach1g00806	837	ProSiteProfiles	Tyrosine specific protein phosphatases domain profile.	211	272	IPR000387	GO:0016311\|GO:0016791
	Bach1g00806	837	SMART	dsp_5	152	291	IPR020422	GO:0006470\|GO:0008138
	Bach1g00806	837	MobiDBLite	consensus disorder prediction	24	80	-	-
	Bach1g00806	837	ProSitePatterns	Tyrosine specific protein phosphatases active site.	236	246	IPR016130	GO:0016311\|GO:0016791
	Bach1g00806	837	SUPERFAMILY	Actin depolymerizing proteins	299	401	-	-
	Bach1g00806	837	Gene3D	Severin	303	399	IPR029006	-
	Bach1g00806	837	PANTHER	MKPA PROTEIN	11	833	-	-
	Bach1g00806	837	ProSiteProfiles	Dual specificity protein phosphatase domain profile.	152	294	IPR020422	GO:0006470\|GO:0008138
	Bach1g00806	837	MobiDBLite	consensus disorder prediction	93	120	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bach1g00806	Bach-Chr1	13687077	13691098	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bach1g00806	1	188	Protein tyrosine phosphatase (PTP) family	AT3G55270	63.731	3.21e-70	245

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bach1g00806	-		-	qsa:O6P43_005717	1122.46