Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach1g00299 CCTAGGTTGCTGTGCATTCAAGAGGAAGACAAAAGGAAGCATTTTAGAGAAGGAACCTGAAAACAGACATAAACCCCCAACCTCTACCATTATTATTGTTGCTTCATAGGATGATGCTTCCTATCAGCTGCTGTCTCTTAATATTCCTCCTGAGCTCTTTCTCTCCTCCTTTCATAGCTGCCTTCAACCTCACCTTACCCCATCAGCATCCTTACCCTGAAGCTGTGGTTCATGAAGTTCAAAGGACAATAAATGCATCTCTGTACAGAAGACAACTACTCGCCGCCACCGATCATGACCAAGCGTCTTGCCTCACCGGGAACCCCGTGGATGATTGCTGGCGGTGCGACCCCAACTGGGCGGCTAACCGTCAGAAGCTGGCCGACTGCGGCATTGGGTTCGGCCGCGATGCCATGGGCGGGAAGGGCGGACAGATCTATATCGTCACCGATTCCTCCGATTCCGACCCAGCAAACCCCCGTCCGGGCACTCTCCGGCACGCCGTTATCCAAGACGTGCCTCTATGGATCGTGTTCTCCGCAGACATGACCATACAGCTCAAGCACGAGCTCATATTCAACAGCTACAAAACCGTCGACGGCCGCGGCACGAACGTGTACATCACCGGAAACGGCTGCATCACACTCCAATATGTGTCCAACATAATCATCCACAACATCCACGTCCACCATTGCAAGCCATCGGGGAACACGTTAATACGGTCGACTCCAACGCACGTAGGGTTCAGGGGGAAATCGGACGGTGACGGGATATCCATCTTCAGTTCAAGGAAGATCTGGATCGACCATTGTTCGCTGTCTTACTGCACAGACGGTCTGATTGATGCAATAATGGGGTCCACAGGGATTACCATATCGAACAACCATTTCGCCCATCACGACGAGGTGATGCTGTTGGGTCACAACGATAAGCATTTGCCGGACACAGGGATGCAGGTGACCATTGCGTTTAACCACTTCGGTGAGGGTCTAGTGCAGCGTATGCCACGGTGCAGACTCGGGTATATACACGTGGTCAACAATGATTTCACGCAGTGGCAGATGTATGCTATCGGCGGTAGCGCTAAACCCACAATAAACAGCCAGGGCAACCGTTATACCGCGCCTTCCGACGCTAATGCCAAAGAGGTGACAAAGCGCGTGGAGACAGACGAGAAGGACTGGACTGGTTGGAATTGGAGGACAGAGGGGGATGTAATGGTAAATGGAGCATTCTTTGTGCCATCAGGGGCTGGACTTAGCGAACAGTATGCTATGGCATCTAGTTTGGAACCAAAGTCGGCCGTTCAAATCGACCAGCTCACCATGTACTCCGGTGTCTTCGGCGATCCCAGGGATAACGGGGATCTATATCCCGGATTCAATGGTGGTGGGACCGTGACCGGCGCCACCAGCAGCAACACCGGCACCGGGGGGTCCAGTGACGATGGGGACTTCTTCGGAATGATATTCAGAGGTAGTAGCAGCGAAGCAGCTCCACCTCCCTCATCCATTGTTTCAACCTTTTTGTCTTTTTTAATTATTTTCATTTTGTATACTATCACCAACCAATTATCATTACTATGA 1586 0.5158 MMLPISCCLLIFLLSSFSPPFIAAFNLTLPHQHPYPEAVVHEVQRTINASLYRRQLLAATDHDQASCLTGNPVDDCWRCDPNWAANRQKLADCGIGFGRDAMGGKGGQIYIVTDSSDSDPANPRPGTLRHAVIQDVPLWIVFSADMTIQLKHELIFNSYKTVDGRGTNVYITGNGCITLQYVSNIIIHNIHVHHCKPSGNTLIRSTPTHVGFRGKSDGDGISIFSSRKIWIDHCSLSYCTDGLIDAIMGSTGITISNNHFAHHDEVMLLGHNDKHLPDTGMQVTIAFNHFGEGLVQRMPRCRLGYIHVVNNDFTQWQMYAIGGSAKPTINSQGNRYTAPSDANAKEVTKRVETDEKDWTGWNWRTEGDVMVNGAFFVPSGAGLSEQYAMASSLEPKSAVQIDQLTMYSGVFGDPRDNGDLYPGFNGGGTVTGATSSNTGTGGSSDDGDFFGMIFRGSSSEAAPPPSSIVSTFLSFLIIFILYTITNQLSLL 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach1g00299 491 PRINTS Pollen allergen Amb family signature 319 338 IPR018082 -
Bach1g00299 491 PRINTS Pollen allergen Amb family signature 390 413 IPR018082 -
Bach1g00299 491 PRINTS Pollen allergen Amb family signature 93 110 IPR018082 -
Bach1g00299 491 PRINTS Pollen allergen Amb family signature 153 169 IPR018082 -
Bach1g00299 491 PRINTS Pollen allergen Amb family signature 117 142 IPR018082 -
Bach1g00299 491 PRINTS Pollen allergen Amb family signature 297 316 IPR018082 -
Bach1g00299 491 PRINTS Pollen allergen Amb family signature 217 238 IPR018082 -
Bach1g00299 491 PRINTS Pollen allergen Amb family signature 361 385 IPR018082 -
Bach1g00299 491 Pfam Pectate lyase 151 334 IPR002022 -
Bach1g00299 491 SUPERFAMILY Pectin lyase-like 58 402 IPR011050 -
Bach1g00299 491 Gene3D - 70 412 IPR012334 -
Bach1g00299 491 SMART amb_all 145 342 IPR002022 -
Bach1g00299 491 FunFam Pectate lyase 70 412 - -
Bach1g00299 491 PANTHER PECTATE LYASE 18-RELATED 30 411 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach1g00299 Bach-Chr1 3526459 3530741 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach1g00299 1 491 Polysaccharide Lyase AT3G53190 62.020 0.0 580
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach1g00299 K01728 - gmx:100808438 796.964