Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach1g00197 ATGGCCTCCTCCTCTCAACATCGCTGCGTTTTTGTTGGGAATATACCGTATGATGCTACAGAGGAGCAGCTTATTGAAATCTGCCAGGAGGTTGGGCCTGTTGTTTCATTCAGATTAGTTATTGATAGAGAAACTGGGAAACCAAAAGGTTATGGTTTCTGCGAGTATAAGGATGAAGAGACAGCTCTAAGTGCTCGTCGTAACCTTCAAGGCTATGAGATAAATGGGCGGCAATTGCGTGTTGATTTTGCTGAAAATGATAAAAATGCTGATAGAAATCGAGAACAGGGACGTGGTGGGCCTGGTCTAGTGGCAAATGCTGACCCTCAGAAACAAGTAGGTGGACCAGCTGCCCATGGGGAAGCTGTTCAACATCAGCCTATTGGTCTTCATATTGCCATCACAGCTGCAACTGTTATGTCAGCAGCTTTAGGTGGTGCTCAGTCTAGCATACATTCAAATCAAAATGGTTTGCAAAGCCAGTCAGCATTGGCACATGATCCTTTGACTCTGCATCTGGCCAAAATGTCCAGGAATCAGCTGAATGAGATTATCTCTGAGCTGAAGGCAATGGCTACACAGAACAAGGAACTAGCTCGACAGCTGTTACTTTCACGACCACAGTTGCCCAAGGCCCTTTTTCAGGCACAGATAATGCTAGGAATGGTGACCCCACAAGTGTTACAAATGCCAAATCTTAGTCAGGTTTCAGGTCAAACCTCACAGCCTCCAGTCAATGAAGGTCAGCTAGGTCAGTCAGGGCTTCCTCCTCGTGCACAAAGCCAGCCTGGCATGATCCCCAGCATTCAAGAAGCTCAAGTCAACACCATAGCTCATAATCCTTTGGTTCCTAATCAATTTAGTGCACATCCAAAGCCTCCTATGCAGCCTCGGATTCAGCTTCCACAACATTCAAGCAAACTTGTTGTACAGCAGAGCACACTCCCAGGGCAATCTAATTTAACACTTCCTTCAATGCACCCCCAGTCTATGGCAAGTTTGTCTGTTAGGCCACCAATTCCACTGGCAATTTCTACTTCTTTGAACCAGCAAATGCAGTCCTCTATGCTACAGCATTCAGGACGTGTTGGAAACCCAAATGCAGTACATAATATTCAGATGAATCATCCAGATCCAAGCTTTCAGCCCGGCCCCCCCTCCATATCAGCTGGTATTTCTCAGTCAATTAGTAACGAAGCTGATAGATCAACCAAAGCTCTTGAACATTCAAATTGGGTCAAGAGAAGTAGCACTTATCCAAACATGCCTTTGGTATCATTAGAGAAAACAAACGTGGTTCATGACTCTTCAGAACCATTTAGTCGCCCTGCTAAGCTGATGAAATTGGATGAAGGAAGGAGCACCCCTTTTTCTGCTGGGTTCACAAATGTTCCTATCAACAATGGATCATCTCAAGGTCTTGGAAGTAGCTCATTACTTTCAAATGAAACTCCTAAAACAGAAGTGCAATACACTGAGCAACAACAATCTTCTCAGTCCCAGCCTCCGTCTGATGTGGAGTCAATTTTACTGCAACAAGTGTTGAATCTCACAGCGGAGCAGTTGAGCTCTTTGCCACCAGAGCAGCAACAACAGGTCATTCAGCTCCAGAAGGCTCTTCGCCGTGATCAGATCCAGTCCTAA 1644 0.4544 MASSSQHRCVFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKNADRNREQGRGGPGLVANADPQKQVGGPAAHGEAVQHQPIGLHIAITAATVMSAALGGAQSSIHSNQNGLQSQSALAHDPLTLHLAKMSRNQLNEIISELKAMATQNKELARQLLLSRPQLPKALFQAQIMLGMVTPQVLQMPNLSQVSGQTSQPPVNEGQLGQSGLPPRAQSQPGMIPSIQEAQVNTIAHNPLVPNQFSAHPKPPMQPRIQLPQHSSKLVVQQSTLPGQSNLTLPSMHPQSMASLSVRPPIPLAISTSLNQQMQSSMLQHSGRVGNPNAVHNIQMNHPDPSFQPGPPSISAGISQSISNEADRSTKALEHSNWVKRSSTYPNMPLVSLEKTNVVHDSSEPFSRPAKLMKLDEGRSTPFSAGFTNVPINNGSSQGLGSSSLLSNETPKTEVQYTEQQQSSQSQPPSDVESILLQQVLNLTAEQLSSLPPEQQQQVIQLQKALRRDQIQS 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach1g00197 547 CDD RRM_CSTF2_RNA15_like 8 84 - -
Bach1g00197 547 Gene3D - 1 120 IPR012677 -
Bach1g00197 547 Gene3D - 504 544 IPR038192 -
Bach1g00197 547 FunFam Cleavage stimulating factor 64 156 231 - -
Bach1g00197 547 Pfam Hinge domain of cleavage stimulation factor subunit 2 162 229 IPR025742 -
Bach1g00197 547 SUPERFAMILY RNA-binding domain, RBD 5 104 IPR035979 GO:0003676
Bach1g00197 547 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 10 80 IPR000504 GO:0003723
Bach1g00197 547 PANTHER CLEAVAGE STIMULATION FACTOR SUBUNIT 2 3 544 - -
Bach1g00197 547 SMART rrm1_1 9 82 IPR000504 GO:0003723
Bach1g00197 547 MobiDBLite consensus disorder prediction 234 264 - -
Bach1g00197 547 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 8 86 IPR000504 GO:0003723
Bach1g00197 547 Pfam Transcription termination and cleavage factor C-terminal 510 542 IPR026896 GO:0031124
Bach1g00197 547 Gene3D - 157 231 - -
Bach1g00197 547 FunFam Cleavage stimulating factor 64 1 117 - -
Bach1g00197 547 MobiDBLite consensus disorder prediction 460 507 - -
Bach1g00197 547 Coils Coil 181 201 - -
Bach1g00197 547 MobiDBLite consensus disorder prediction 83 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach1g00197 Bach-Chr1 2420531 2426416 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach1g00197 10 83 Eukaryotic Initiation Factors Gene Family AT2G23350 31.081 2.13e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach1g00197 K14407 - gmx:100806489 699.508