Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Bach1g00054 ATGGAAGTCGTATCGGTATCTGTTTCGCGCACATTTAGCAATTCGAACACTCTATCCATTTTCAGACCTCAAACCACCCAAATTCAGGGTCTTTCAGTAACCATTCGATTACCCAAGTCACCCAAGAGCAATTTCCATCTTTCTTCTTCTTATACTTCTTATTCTTTAATCCCCTTATATTATTTCTCTACTAGGATAGCTGCAACTTCAGCAGCGACTTCTAGTTCTACTTCCTACACCTCTTCTTCTTCCACTAGGGACAACCGCCATTGGATGGTGATAATGGAGAGGCCTGTGCAAGGGGTCAGTTCTAAGGCAGAAGTCATTGATTATTATGTGAAGACTCTTCAAAGAGTTTTGCGAAGTGAGAAAGACGCTCAAATGTGCATATATGATGCTTCCTGGGAGACCCAATTCGGTTTTTGTTGTGACATAGAAGAAGAAACTTCCTCCCAGCTTGCCCGTTTACCTGGAGTCTTATCAGTAAGGCCTGATCCAGATTTCAACTCCTTAGAGAAGCATTATGGTTCATCAAATGGCCAGGCAGATAATCTGTCAAATCTACAAATGGGACCAGCTTTGCTGTTTCCTGCGGGGCATTCCAAACACTGGCTTGTTAGAATGGATAAACCTGGGGTTGGGGTTGTTACAAAGGCCCAAATTGTTGATTATTATGCTCAAATACTGACCAAGGTCTTGGGAAATGAGAAGGATGCACAAATGTGTGTATACCATGTTTCCTGGAAAACAAACTTTGGCTTTTGTTGTGAACTTGATGAGGATTGTGCACGGGAACTAGCTGGAGTGCCAGGGGTCCTATCAGTTCAGCCAGATAATAATTTTGAGTCAGAAAATAAGGATTATGGAGGTACTAATTTGGAAAACAGTTTGAATGTGCTGAACTCTTCTGAAGCAAGTCAGGCGGCCCCTATAAAAACAAAAAAACTTTTTGTGACAGGCCTTTCATTTTATACATCCGAGAAAACCTTACGTGCAGCATTTGAAGGCTTTGGTGAGCTTGTTGAAGTTAAAGTTATTATGGATAAAATTTCTAAAAGGTCCAAGGGTTATGCATTTGTGGAATATACAAAAGAGGAGGCCGCAAGTGCAGCACTGAAGGAGATGAATGGCAAGATTATCAATGGTTGGATGATAGTTGTTGATGTTGCCAGGAGTAACCCTCCAAAATACGGTAGAGATCATGCAAGATCAGCAGCCTGA 1221 0.4169 MEVVSVSVSRTFSNSNTLSIFRPQTTQIQGLSVTIRLPKSPKSNFHLSSSYTSYSLIPLYYFSTRIAATSAATSSSTSYTSSSSTRDNRHWMVIMERPVQGVSSKAEVIDYYVKTLQRVLRSEKDAQMCIYDASWETQFGFCCDIEEETSSQLARLPGVLSVRPDPDFNSLEKHYGSSNGQADNLSNLQMGPALLFPAGHSKHWLVRMDKPGVGVVTKAQIVDYYAQILTKVLGNEKDAQMCVYHVSWKTNFGFCCELDEDCARELAGVPGVLSVQPDNNFESENKDYGGTNLENSLNVLNSSEASQAAPIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKVIMDKISKRSKGYAFVEYTKEEAASAALKEMNGKIINGWMIVVDVARSNPPKYGRDHARSAA 406
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Bach1g00054 406 FunFam Organelle RRM domain-containing protein 1, chloroplastic 192 281 - -
Bach1g00054 406 Gene3D - 290 406 IPR012677 -
Bach1g00054 406 FunFam Organelle RRM domain-containing protein 1, chloroplastic 282 406 - -
Bach1g00054 406 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 316 382 IPR000504 GO:0003723
Bach1g00054 406 SMART rrm1_1 315 388 IPR000504 GO:0003723
Bach1g00054 406 SUPERFAMILY RNA-binding domain, RBD 303 399 IPR035979 GO:0003676
Bach1g00054 406 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 197 282 IPR037045 -
Bach1g00054 406 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 72 169 IPR037045 -
Bach1g00054 406 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 314 392 IPR000504 GO:0003723
Bach1g00054 406 PANTHER MULTIPLE ORGANELLAR RNA EDITING FACTOR 2, CHLOROPLASTIC-RELATED-RELATED 194 383 IPR039206 GO:0016554
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Bach1g00054 Bach-Chr1 615360 618556 Dispersed/Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach1g00054 311 400 C2H2 Transcription Factor Family AT2G19380 35.556 1.17e-12 67.8
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach1g00054 - - qsa:O6P43_004903 573.548