Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach1g00020 ATTTGAGCGTGTCTTAGGAAACATTAGAAGATGTTCTTCACGGTATTAGACATTTGACCGTCAGTTGAGACAATTAGCAACTAGAGAGGAGCATCTATCTTTTCAAGCGAAGTTGGTGACATATTAAGTTCTTAGGCTGTCATTGTATTGGAGCAAATGTCCTTCCGCAGTATAGTTCGAGATGTCAGGGATGGATTTGGAAGCTTGTCAAGGCGGAGTTTTGAGGTAATGCTTCCTGGTCATCACAGGGGGAAGTCACATAGTTCAGTACATGAGTTACATGAACAGCCTCCAGTGATACAGAGCAGCCGCTGGGCTAGTCTTCCAGCTGAACTTCTTAGGGATGTTGTGAAAAGATTGGAAGCAAGTGAGAGTGCATGGCCTGCTCGCAAGCATGTGGTTGCATGTGCTGCTGTGTGCAAGTCTTGGAGAGAAATGTGCAAAGAAATTGTTAGCAGTCCTGAATTCTGTGGAAAGATCACTTTCCCTGTTTCCTTAAAGCAGCCTGGACCTAGGGATGGAACTATGCAGTGTTTCATTAAGAGAGACAAATCTAATCTCACGTACCACCTTTTCCTTTGCCTTAGTCCTGCCGTGCTTGTTGAAAATGGAAAGTTTCTTCTCTCTGCAAAACGGACGAGAAGAACAACTTGCACAGACTATATCATATCAATGGATGCAGATAACATATCGAGATCTAGCAACACTTATATTGGAAAACTGAGGTCGAATTTTCTTGGCACCAAATTCATAATCTATGATACACAACCTCCCTATAATAATGCACAGCTGTCTCCACCTGGCAGAAGCCGTAGGTTCTATTCAAAAAAGGTTTCTCCAAAGGTTCCTAGTGGCAGCTATAATATTGCTCAAGTCACCTATGAGTTGAATGTGCTAGGTACAAGGGGGCCACGGAGGATGCACTGCACCATGTACTCAATCCCTGCATCGTCTCTTGAACCCGGTGGCGTTGTCCCAGGCCAGCCAGAGCTCCTTCCCCGCTCTCTCGAGGACTCGTTCCGGAGCATCTCCCTCTCAAAATCAATTGACAATTCATCGGAGTTTAGCAGCTCTAGATTCTCAGACATAGTTGGGCCTGGCAATGAAGAAGAGGAGGGAAAGGAGAGACCACTAGTTCTCAAGAACAAGGCACCGAGATGGCATGAGCAGTTGCAATGTTGGTGCCTCAACTTCAAGGGCCGGGTGACGGTTGCCTCTGTCAAGAATTTTCAACTGATCGCTGCAACACAGCCTGCAGCCGGTGCTCCAACCCCGGCACAGCCAACACAGCAGTCATCTTCTTCTTCTGATCATGACAAGATTATTCTTCAGTTTGGCAAGGTTGGTAAGGATATGTTTACAATGGACTATCGATATCCCCTCTCTGCATTTCAGGCATTTGCCATCTGCTTGACCAGCTTTGACACAAAACTGGCTTGTGAATAGTGAGTGACAGAGAGATATGGTAAGAAAAAAAAAAATAGAATTTAATATCCATTTGTAGGCATTTTGTAGGATGGTGAAGTTGCATGATTGTGCGCCTCATAGTTTGACTTCAAAGTATACAACAATCTGCTCAATGGTTATCATTCTGGTTTTTC 1601 0.4472 MSFRSIVRDVRDGFGSLSRRSFEVMLPGHHRGKSHSSVHELHEQPPVIQSSRWASLPAELLRDVVKRLEASESAWPARKHVVACAAVCKSWREMCKEIVSSPEFCGKITFPVSLKQPGPRDGTMQCFIKRDKSNLTYHLFLCLSPAVLVENGKFLLSAKRTRRTTCTDYIISMDADNISRSSNTYIGKLRSNFLGTKFIIYDTQPPYNNAQLSPPGRSRRFYSKKVSPKVPSGSYNIAQVTYELNVLGTRGPRRMHCTMYSIPASSLEPGGVVPGQPELLPRSLEDSFRSISLSKSIDNSSEFSSSRFSDIVGPGNEEEEGKERPLVLKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLIAATQPAAGAPTPAQPTQQSSSSSDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLTSFDTKLACE 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach1g00020 429 SUPERFAMILY F-box domain 45 97 IPR036047 GO:0005515
Bach1g00020 429 Pfam F-box domain 53 100 IPR001810 GO:0005515
Bach1g00020 429 ProSitePatterns Tub family signature 1. 346 359 IPR018066 -
Bach1g00020 429 FunFam Tubby-like F-box protein 110 429 - -
Bach1g00020 429 MobiDBLite consensus disorder prediction 370 385 - -
Bach1g00020 429 Pfam Tub family 114 424 IPR000007 -
Bach1g00020 429 MobiDBLite consensus disorder prediction 299 324 - -
Bach1g00020 429 ProSitePatterns Tub family signature 2. 414 429 IPR018066 -
Bach1g00020 429 Gene3D Tubby Protein; Chain A 112 423 IPR025659 -
Bach1g00020 429 CDD F-box_AtTLP-like 53 97 - -
Bach1g00020 429 SUPERFAMILY Tubby C-terminal domain-like 102 429 IPR025659 -
Bach1g00020 429 Gene3D - 48 101 - -
Bach1g00020 429 PRINTS Tubby superfamily signature 346 362 IPR000007 -
Bach1g00020 429 PRINTS Tubby superfamily signature 386 405 IPR000007 -
Bach1g00020 429 PRINTS Tubby superfamily signature 328 345 IPR000007 -
Bach1g00020 429 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Bach1g00020 429 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Bach1g00020 429 PRINTS Tubby superfamily signature 234 261 IPR000007 -
Bach1g00020 429 PRINTS Tubby superfamily signature 407 429 IPR000007 -
Bach1g00020 429 PANTHER TUBBY-RELATED 34 427 - -
Bach1g00020 429 FunFam Tubby-like F-box protein 48 101 - -
Bach1g00020 429 MobiDBLite consensus disorder prediction 366 385 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach1g00020 Bach-Chr1 206335 210492 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach1g00020 1 429 TUB Transcription Factor Family AT1G76900 71.209 0.0 623
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Bach1g00020 Tub 9.8e-118 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach1g00020 K19600 - rcu:8283226 735.717
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bach1g00020 1 206335 210492 Bach1g00020 1 206335 210492 ECH