Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach14g00625 ATGCTTATCTGTGTAAATCCGCACCAACCATGGAATTCCACCATTCCAACTCTCCTTCTTTTCCAAAAGTGCAAAACTTTACACCAAGTAAACCAAATACATGCCAGATTGATAACAACTGGGTTCATCAGAAACCCTTCGCTAACCACCAGACTTATCCTCAATTTCATTTCTTCACCTCATGAACCTCTCGTTGAATTTGCTCGCTATGTCTTCTTCAAGTACCACGCTTATTGTATTCATCAAGAACACGAGGACCCTTTTCTTTGGAATGCTGTAATCAGATCGTATTCTCATGGTTGTGACCCAAGAGAAGCCTTTTTAATTCTATGTTTGATGCTTGAAAATGGAATTTTTTTGGATAAATTCTCATTCTCCTTGGTTTTGAAAGCTTGTTCTCAAGTAGGTTTGATGAGAGAAGGAATGCAGGTTCATGGGTTGTTGTGTAAAACGGATATTGGGTCTGATGTATTTCTGCAGAATTGTTTGATTGGGTTGTTTCTGCGATGTGGGTGCATTCAGTCTGCCCGGCAACAGTTTGACAGAATGCCTAAAAGGGATTCTGTTTCGTATAACTCCATGATTGATGGTTATATCAAATATGGAATGGTTGAAAATGCACGCGAACTGTTTGATAGTATGCCACTTAGTGAGAAGAATTTGGTTACTTGGAATTCAATGATTGGAGGGCATGTGCGATCTGAATATGGCCTAAAGTTTGCATGGAATTTGTTCATAAAAATGCCTAAGAGAGACTTCGTTTCTTGGAATACGATGATTGATGGATGTGTAAAGCAAGGGAAGATGGAAGATGCCCGAGCATTGTTTAATAAGATGCCGGAAAGGGATATGGTTAGCTGGGCTACTATGATAGACGGGTATGGGAAATTGGGTGATCTTCATGTTGCAAGGAGTTTGTTTGATGAAATGCCGCTGAGAGACGTTATTTCTTGTAATTCCATGATGGCTGGGTATGTTCAGAATGGTTATTGCATTGAAGCTTTGAAACTATTTTATGATATGAGCAGGGCAGCGAATATATCACCTGATAGTACCACATTGTTAATCGTACTCACAGCAATTGCCCAATTAGGACATGTTAAAGTTGGAGCCTTGATTCATCGTTATTTAGATGAAAATGGATACTCTTTGAATGGTAAACTTGGTGTTGCCTTAATTGACATGTATTCTAAGTGTGGTAGCATGGAGAGTGCTATCTCAGTGTTTGAGAATATTGAACAAAAAAGCGTAGATCATTGGAATGCTATGATTGGCGGCTTAGCTATTCATGGCATGGGTGAAATGGCTTTCGATTTTTTCATGGAGATGGAAAGGCTTTCTATTAAACCTGATGACATCACATTCATTGGAGTATTAAGTGCTTGTGGACATGCTGGCTTGCTGAAGGAGGGACTGATATGTTTCGAGCTCATGCGAAGAGTATACAAAGTAGAACCTAAACTGCAACACTATGGATGCATGGTGGACATCCTTAGCAGAGTAGGGCGCATAGAAGCAGCCAAGAAACTCATTGAGGAGATGCCAATTGAGCCAAATGACGTGATTTGGAGGACATTGCTTAGTGCTTGCCAAATTTATGAAAACTTCTCTGTAGGAGAGCCAGTAGCTCAGCAGCTTTTTCGGTTGGATTCTTGTAATCCAAGCTCCTATGTGCTGCTATCTAACATTTATGCAAGCGTGGGCATGTGGGACAAGGCTAAAAGGGTTAGGACAGAGATGAAAGAGAGAAATCTACAGAAAATTCCAGGTTGTAGTTGGATTGAACTGGACGGAACCGTCCATCAGTTCTCTGTACAAGATAAGTCACACCCTCAGGGTTTTTTGGTCCGCAGCAGAGGCAGCGTAGAGAGTGAGAAGAGTTGCAGAGGGCTTCCTCCTTCTCAAGCCGTAACCATGGGTCGTATGCACAGCCGAGGTAAGGGTATCTCTGCTTCAGCTCTTCCCTACAAGAGGACTCCTCCGAGCTGGCTGAAGATTTCTTCTCAGGATGTTGAGGACAACATCTGCAAGTTTGCCAAGAAAGGTCTGACACCTTCTCAAATTGGTGTTGTTCTTCGTGATTCCCATGGAATTGCTCAAGTGAAGAGTGTCACTGGAAGCAAGATTTTGCGTATACTGAAGGCCCATGGGCTTGCTCCTGAAATTCCAGAAGACTTGTACCACCTCATCAAAAAGGCAGTGTCAATTAGGAAGCATTTAGAGAGGAATAGGAAGGACAAAGATTCAAAATTTAGGTTAATTCTGGTTGAGAGCAGGATTCACCGCCTTGCCCGTTACTACAAGAAGACAAAGAAGCTTCCACCTGTATGGAAATATGAATCAACCACTGCCAGCACTCTTGTGGCTTAGAGTGAGATAATGGTAGCATCAGGTGCTGTCTTCATTGTAATTTTGCTCTTTTAAAGTTAATTTCTTGGGCACTTTTATTTGTCGTGTTCGAATTTTGGAAATGAAGATTCTAGTGATTAAACTTAATTGGTTACTTTTATACAGGATGTTCTTATTATGAGCAATCTGCATTTTTTTTCCCTTCTCA 2557 0.4122 MLICVNPHQPWNSTIPTLLLFQKCKTLHQVNQIHARLITTGFIRNPSLTTRLILNFISSPHEPLVEFARYVFFKYHAYCIHQEHEDPFLWNAVIRSYSHGCDPREAFLILCLMLENGIFLDKFSFSLVLKACSQVGLMREGMQVHGLLCKTDIGSDVFLQNCLIGLFLRCGCIQSARQQFDRMPKRDSVSYNSMIDGYIKYGMVENARELFDSMPLSEKNLVTWNSMIGGHVRSEYGLKFAWNLFIKMPKRDFVSWNTMIDGCVKQGKMEDARALFNKMPERDMVSWATMIDGYGKLGDLHVARSLFDEMPLRDVISCNSMMAGYVQNGYCIEALKLFYDMSRAANISPDSTTLLIVLTAIAQLGHVKVGALIHRYLDENGYSLNGKLGVALIDMYSKCGSMESAISVFENIEQKSVDHWNAMIGGLAIHGMGEMAFDFFMEMERLSIKPDDITFIGVLSACGHAGLLKEGLICFELMRRVYKVEPKLQHYGCMVDILSRVGRIEAAKKLIEEMPIEPNDVIWRTLLSACQIYENFSVGEPVAQQLFRLDSCNPSSYVLLSNIYASVGMWDKAKRVRTEMKERNLQKIPGCSWIELDGTVHQFSVQDKSHPQGFLVRSRGSVESEKSCRGLPPSQAVTMGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVVLRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach14g00625 789 FunFam Pentatricopeptide repeat-containing protein, mitochondrial 389 612 - -
Bach14g00625 789 SMART Ribosomal_S13_N_2 639 698 IPR012606 GO:0003735|GO:0005840|GO:0006412
Bach14g00625 789 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 314 349 IPR002885 -
Bach14g00625 789 Gene3D Tetratricopeptide repeat domain 390 612 IPR011990 GO:0005515
Bach14g00625 789 Gene3D Tetratricopeptide repeat domain 12 151 IPR011990 GO:0005515
Bach14g00625 789 CDD Ribosomal_S15p_S13e 708 781 IPR000589 GO:0003735|GO:0005840|GO:0006412
Bach14g00625 789 Gene3D - 673 720 - -
Bach14g00625 789 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 240 614 IPR046960 GO:0003723|GO:0009451
Bach14g00625 789 ProSitePatterns Ribosomal protein S15 signature. 736 766 IPR000589 GO:0003735|GO:0005840|GO:0006412
Bach14g00625 789 Gene3D - 721 789 - -
Bach14g00625 789 Pfam PPR repeat family 313 361 IPR002885 -
Bach14g00625 789 Pfam PPR repeat family 416 462 IPR002885 -
Bach14g00625 789 SMART Ribosomal_S15_2 708 787 IPR000589 GO:0003735|GO:0005840|GO:0006412
Bach14g00625 789 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 86 120 IPR002885 -
Bach14g00625 789 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 416 450 IPR002885 -
Bach14g00625 789 Pfam Ribosomal S13/S15 N-terminal domain 639 698 IPR012606 GO:0003735|GO:0005840|GO:0006412
Bach14g00625 789 Gene3D Tetratricopeptide repeat domain 313 376 IPR011990 GO:0005515
Bach14g00625 789 Pfam E motif 533 595 IPR046848 -
Bach14g00625 789 SUPERFAMILY S15/NS1 RNA-binding domain 704 780 IPR009068 -
Bach14g00625 789 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 187 221 IPR002885 -
Bach14g00625 789 Pfam Ribosomal protein S15 712 781 IPR000589 GO:0003735|GO:0005840|GO:0006412
Bach14g00625 789 Pfam PPR repeat 391 415 IPR002885 -
Bach14g00625 789 Pfam PPR repeat 491 514 IPR002885 -
Bach14g00625 789 Pfam PPR repeat 222 249 IPR002885 -
Bach14g00625 789 Pfam PPR repeat 89 118 IPR002885 -
Bach14g00625 789 Pfam PPR repeat 189 214 IPR002885 -
Bach14g00625 789 Pfam PPR repeat 254 283 IPR002885 -
Bach14g00625 789 Gene3D Tetratricopeptide repeat domain 236 312 IPR011990 GO:0005515
Bach14g00625 789 Gene3D Tetratricopeptide repeat domain 152 235 IPR011990 GO:0005515
Bach14g00625 789 FunFam 40S ribosomal protein S13 673 720 - -
Bach14g00625 789 NCBIfam pentatricopeptide repeat 420 451 IPR002885 -
Bach14g00625 789 NCBIfam pentatricopeptide repeat 254 285 IPR002885 -
Bach14g00625 789 NCBIfam pentatricopeptide repeat 316 350 IPR002885 -
Bach14g00625 789 NCBIfam pentatricopeptide repeat 189 214 IPR002885 -
Bach14g00625 789 NCBIfam pentatricopeptide repeat 285 313 IPR002885 -
Bach14g00625 789 NCBIfam pentatricopeptide repeat 89 121 IPR002885 -
Bach14g00625 789 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 553 587 IPR002885 -
Bach14g00625 789 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 252 286 IPR002885 -
Bach14g00625 789 FunFam 40S ribosomal protein S13 721 789 - -
Bach14g00625 789 Hamap 30S ribosomal protein S15 [rpsO]. 641 787 IPR023029 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach14g00625 Bach-Chr14 5018212 5023652 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach14g00625 639 789 Cytoplasmic Ribosomal Protein Gene Family AT4G00100 93.377 2.76e-95 291
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach14g00625 - - gmx:100788616 964.911