Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach14g00535 ATGTCGTTCACTGGAACTCTCGATAAATGCAAGGCCTGCGACAAGACTGTTTATGTGGTCGACATGATGTCCCTTGAAGGTGTGCCTTACCACAAGAACTGCTTCAAATGCAGCCACTGCAATGGAGTTCTTACGATGAGCACCTACTCCTCCATGGATGGTGTCCTCTATTGCAAGCCACATTTTGAACAGCTTTTCAAGGAATCTGGCAATTTCAGCAAGAATTTCCAGAATGCAAGGTCTTCTGAGAGGAACGCTGATATGAACAGGACACCCAGCAGGCTTTCTTCCTTGTTCAGTGGTACCCAAGACAAATGCTCTGTTTGCTCAAAGACTGTCTATCCGCTGGAAAAGGTAACAATGGAAGGAGAATGCTACCACAAATCATGCTTTAGGTGTGCTCATGCTGGGTGCCCTCTCACACATTCCAACTATGCTGCACTAGATGGTGTCCTTTACTGCAGGGTCCATTTTGCTCAACTTTTCATGGAAAAGGGGAACTACAGCCATGTGCTCCAATCTACTTCACACAAGAGAACTGCCAGTGGCAGCACACCACCTCCTGAACCAGCTGATGATGATCAGCCACAGGCAGAAGATTCTGATGAGAAGGAGGAGAAAGAGAAGGAGAAGGCATCAGATAATGAGCATGAACCCTGA 660 0.4697 MSFTGTLDKCKACDKTVYVVDMMSLEGVPYHKNCFKCSHCNGVLTMSTYSSMDGVLYCKPHFEQLFKESGNFSKNFQNARSSERNADMNRTPSRLSSLFSGTQDKCSVCSKTVYPLEKVTMEGECYHKSCFRCAHAGCPLTHSNYAALDGVLYCRVHFAQLFMEKGNYSHVLQSTSHKRTASGSTPPPEPADDDQPQAEDSDEKEEKEKEKASDNEHEP 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach14g00535 219 MobiDBLite consensus disorder prediction 202 219 - -
Bach14g00535 219 FunFam LIM domain and actin-binding 1 100 170 - -
Bach14g00535 219 MobiDBLite consensus disorder prediction 173 219 - -
Bach14g00535 219 Gene3D Cysteine Rich Protein 5 72 - -
Bach14g00535 219 SMART lim_4 9 61 IPR001781 -
Bach14g00535 219 SMART lim_4 105 157 IPR001781 -
Bach14g00535 219 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Bach14g00535 219 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 76 - -
Bach14g00535 219 FunFam LIM domain and actin-binding 1 4 74 - -
Bach14g00535 219 Pfam LIM domain 10 65 IPR001781 -
Bach14g00535 219 Pfam LIM domain 106 161 IPR001781 -
Bach14g00535 219 PANTHER OS06G0237300 PROTEIN 6 81 - -
Bach14g00535 219 CDD LIM1_SF3 6 68 - -
Bach14g00535 219 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Bach14g00535 219 ProSiteProfiles LIM domain profile. 104 164 IPR001781 -
Bach14g00535 219 Gene3D Cysteine Rich Protein 100 170 - -
Bach14g00535 219 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Bach14g00535 219 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 98 131 - -
Bach14g00535 219 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 132 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach14g00535 Bach-Chr14 4055028 4056468 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Bach14g00535 LIM 2e-10 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach14g00535 - K09377 twl:119983128 346.665