Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach13g01422 ATGTCAACTTTGTCCTCCCAGCCCCAGGGATATCATCAACCCTCATCCATTGAGGAAGTCCGAACCCTTTGGATTGGGGATTTACAGTACTGGGTCGACGAAGCCTACCTTAATCATTGTTTTGCTCACACTGGCGAGGTAGTTTCCATAAAAATTATACGCAATAAGATCACTGGACAACCCGAGGGATATGGGTTTGTGGAGTTTGTTTCACATGCATCAGCAGAAAGGATTCTGCAGACTTACAACGGGACACAAATGCCTGGAACTGAACAAACTTTTAGATTGAATTGGGCCTCTTTTGGTATTGGAGAACGGCGTCCTGATGCTGGTCCTGAGCACTCGATTTTTGTGGGGGATTTGGCACCTGATGTTACAGATTATCTACTACAGGAGACATTTCGAGCCCATTATCCTTCAGTTAGAGGTGCCAAAGTAGTGACTGATCCTAATACAGGGCGCTCTAAGGGATATGGATTTGTCAAATTTTCTGATGAGTCAGAAAGGAATCGTGCTATGACTGAAATGAATGGGATGTATTGCTCAACGAGGCCAATGCGTATTAGTGCTGCAACACCCAAAAAGCCCACTGGTATTCAACAGCAATATGCTGTTGCCAAAGCAATATATCCAATCCCAGCTTACAATACCCCAGTGAGTACAGTTCTGCCTGATTATGATGCGAATAATACCACTATTTTTGTTGGTAATTTGGATATCAATGTCAGTGAAGAGGAGCTGAAGCAAACCTTTTTGCAATTGGGAGAAATTGTCTCTGTCAAGATTCACGCTGGAAAGGGATTTGGTTTTGTTCAATTTGGTGCCAGAGCATCTGCTGAAGAAGCCATTCTGAGGATGCAAGGAAAAGTCCTAGGTCAAAAAGCAGTCCAAATTGCTTGGGGAAGGAGCACAACAGCTAGACAGGACTTACCTGGTAGCTGGGGGCCACAGATTGATCCAAGTCAATGGAGTGCCTACTATGGATATGGTCAAGGTTATGAAGCTTATGCTTATGGGGCGACGCATGATCCTTCTGCATATGCGTATGGTGCATATGCTGGTTATGCCCAGTATCCTCAACAGGTTGAAGGCGGTCAAGACATGGCAGCTATGGCAATGCCTACCATGGAACAAAGGGAAGAGCTGTACGATCCTCTGGCTATGCCTGATGTGGATAAGTTAAATGCCGCATACCTCTCAGTCCATGGAAGTGCCATTTTAGGGCGGTCTCTCTGGCAGAAAACCTCGCCATTCTTACAGCAAGCGTAGTATCTATTTGTATTACATCACTAGAAGGTTTAGATTGTGTTAATGTGGTAGAGTAAATTTTGCGTTTGATTTGGCGATATGAAACCCCAAGCATACAAGGAGCCTTGACCCATATGATTAACATTATTTTGCAAATCGACCGTTGTGATACACACATCGCAAACTTCGATTATATTTGGTGTCAACTGTCATAATGGATGTAACGCCATCACAGTACAAATATGCCCTTGCAATGGATTTGCTTTTATA 1518 0.4387 MSTLSSQPQGYHQPSSIEEVRTLWIGDLQYWVDEAYLNHCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHASAERILQTYNGTQMPGTEQTFRLNWASFGIGERRPDAGPEHSIFVGDLAPDVTDYLLQETFRAHYPSVRGAKVVTDPNTGRSKGYGFVKFSDESERNRAMTEMNGMYCSTRPMRISAATPKKPTGIQQQYAVAKAIYPIPAYNTPVSTVLPDYDANNTTIFVGNLDINVSEEELKQTFLQLGEIVSVKIHAGKGFGFVQFGARASAEEAILRMQGKVLGQKAVQIAWGRSTTARQDLPGSWGPQIDPSQWSAYYGYGQGYEAYAYGATHDPSAYAYGAYAGYAQYPQQVEGGQDMAAMAMPTMEQREELYDPLAMPDVDKLNAAYLSVHGSAILGRSLWQKTSPFLQQA 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach13g01422 422 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 231 303 IPR000504 GO:0003723
Bach13g01422 422 FunFam polyadenylate-binding protein RBP45 214 310 - -
Bach13g01422 422 Gene3D - 218 310 IPR012677 -
Bach13g01422 422 CDD RRM1_SECp43_like 22 102 - -
Bach13g01422 422 Gene3D - 20 100 IPR012677 -
Bach13g01422 422 SUPERFAMILY RNA-binding domain, RBD 106 202 IPR035979 GO:0003676
Bach13g01422 422 FunFam Polyadenylate-binding protein RBP47B 102 204 - -
Bach13g01422 422 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 114 193 IPR000504 GO:0003723
Bach13g01422 422 CDD RRM2_SECp43_like 113 192 - -
Bach13g01422 422 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 14 307 - -
Bach13g01422 422 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 23 91 IPR000504 GO:0003723
Bach13g01422 422 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 116 184 IPR000504 GO:0003723
Bach13g01422 422 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 233 296 IPR000504 GO:0003723
Bach13g01422 422 SUPERFAMILY RNA-binding domain, RBD 214 332 IPR035979 GO:0003676
Bach13g01422 422 Gene3D - 103 208 IPR012677 -
Bach13g01422 422 SUPERFAMILY RNA-binding domain, RBD 9 89 IPR035979 GO:0003676
Bach13g01422 422 FunFam Polyadenylate-binding protein RBP47B 20 100 - -
Bach13g01422 422 SMART rrm1_1 232 299 IPR000504 GO:0003723
Bach13g01422 422 SMART rrm1_1 22 97 IPR000504 GO:0003723
Bach13g01422 422 SMART rrm1_1 115 189 IPR000504 GO:0003723
Bach13g01422 422 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 21 101 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach13g01422 Bach-Chr13 18109069 18112869 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach13g01422 20 376 Eukaryotic Initiation Factors Gene Family AT1G49760 23.393 8.40e-19 87.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach13g01422 - - gmx:100799421 691.419
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bach13g01422 13 18109069 18112869 Bach13g01422 13 18109069 18112869 ECH