Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach13g01370 ATGGATGATGGAAGGGGAGTTCTTGTACAGAGCTTGATTGACTTGGTGAATGAGATAGCTGTGATCTCAGATTACAGATGTACAGTAAAGAAGCAATACTGTAATTTGGCCAGAAGACTTAAGCTATTGACTCCAATGTTTGAGGAGATAAGAGACAGCAAAGAGGCCCTCCCTTTTAGTTTAAAAGCTTTGGTTTCCCTGAAGGAAGCTCTGGAATCGGCCAAGCAGCTTCTCAGATTTGGGAGTGAGGGCAGCAAGATTTACCTGGCTCTAGAGAGGGACCAAATTATGAATAAATTCCACGAGTCGACTGACCAGTTGGAACAAGCCTTGAGTGGAATTTCCTACGATAAACTTGACATATCCGAAGAAGTGAAGGAGCAGGTTGAGCTTGTTCTTGCCCAGTTCCGAAGAGCCAAAGGAAGGGCTGATACACCCGATGTTGAGTTGCATGAAGATCTTGTATCTCTTTACAACAAAAGCAATGATACAGCTACGGATCCGGCTGTTCTATGGAGATTATCTGAAAAGTTGGAATTGATGGGAATATCTGATCTCACTCATGAGTCACTAGCTTTGCATGAGATGGTGACAGCAAGCGGTGGGGATCCAGGGTCAAGCATTGAGAAGATGTCAATGCTGTTGAAGAAAATAAAGGATTTTATGCTAACTGAAAATCTAGACTTGGATGATACTGTCGGAGGAAAAGGCCTTTCTTCAAGTTGCAGCGAACGAGGAATAAATGAAAAAAATCATCAGGCCCCCGTTATTCCTGATGATTTTCGATGTCCAATATCCCTAGAATTGATGAAAGATCCTGTCATTGTTTCAACAGGACAGACCTATGAGCGCTCTTGTATAGAGAAATGGTTGGAAGCTGGGCATGGGACATGTCCGAAAACACTGCAGACACTCACTAGTACTGTTTTAACACCCAATTATGTGTTACGGAGCCTCATAGCACAGTGGTGCGAAACCAATGGTGTAGAACCACCAAAACGGCCCAGCAGTTCTCGACCAAGTAAATCAACATCTTCCTGCTCACCTGCTGAGCGTAGCAAGATTGAAAATCTTCTTCGCAAGCTTACTTCTGGGAATCCTGAAGACAAGAGATTAGCTGCAGGTGAGATCCGCCTTCTCGCAAAGCGCAATGCAGATAATCGTGTTGCCATTGCTGAAGCTGGTGCAATCCCTCTCCTGGTTGGCCTCCTCTCAACGCCTGACTCCCGCATCCAAGAGCATGCTGTGACAGCACTTCTGAATCTTTCTATATGTGAAAATAACAAAGGAAGTATTATATCTTCTGGGGCTGTTCCTGGTATAGTTCATGTGCTCAAGAAGGGCAGCATGGAAGCTCGGGAAAATGCAGCAGCAACACTGTTCAGCCTTTCAGTCATAGATGAAAATAAGGTTACAATTGGTTCTTCAGGAGCCATCCCACCACTAGTGACACTGCTGAGTGAGGGTACCCAAAGGGGTAAGAAAGATGCTGCGACAGCACTCTTCAATTTGTGTATTTACCAGGGTAACAAAGGAAAGGCAGTGAGGGCTGGTGTTATTCCCACACTGATGCGACTGCTGACAGAACCTGGTGGTGGCATGGTGGATGAAGCATTGGCTATTTTGGCAATACTGGCTAGCCATCCTGATGGGAAGGCTGCGATTGGTGCTGCAGAGGCAGTTCCAGTTTTGGTAGAAGTTGTTGGGAATGGATCCCCACGGAACAAAGAGAATGCAGCTGCAGTTTTGGTGCACCTTTGTTCTGGAGATCAACAATATGTAATACAGGCCCAAGAGCTGGGTGTGATGGCTTCATTGTTGGATTTGGCTCAAAATGGTACAGACAGAGGCAAAAGAAAGGCCGGACAGTTACTAGAGCGTATAAGCAGGTTCATTGATCAGCAGCAGCAGCAACAACAACAACTGGAGGAAGTTCAAACACAAAGCGAGCTTGAAGCTCAGAACCTGGATGCACCATCACCTTCTATTACTAACCATGTAGGTAACTAA 2010 0.4542 MDDGRGVLVQSLIDLVNEIAVISDYRCTVKKQYCNLARRLKLLTPMFEEIRDSKEALPFSLKALVSLKEALESAKQLLRFGSEGSKIYLALERDQIMNKFHESTDQLEQALSGISYDKLDISEEVKEQVELVLAQFRRAKGRADTPDVELHEDLVSLYNKSNDTATDPAVLWRLSEKLELMGISDLTHESLALHEMVTASGGDPGSSIEKMSMLLKKIKDFMLTENLDLDDTVGGKGLSSSCSERGINEKNHQAPVIPDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLEAGHGTCPKTLQTLTSTVLTPNYVLRSLIAQWCETNGVEPPKRPSSSRPSKSTSSCSPAERSKIENLLRKLTSGNPEDKRLAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRIQEHAVTALLNLSICENNKGSIISSGAVPGIVHVLKKGSMEARENAAATLFSLSVIDENKVTIGSSGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVIPTLMRLLTEPGGGMVDEALAILAILASHPDGKAAIGAAEAVPVLVEVVGNGSPRNKENAAAVLVHLCSGDQQYVIQAQELGVMASLLDLAQNGTDRGKRKAGQLLERISRFIDQQQQQQQQLEEVQTQSELEAQNLDAPSPSITNHVGN 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach13g01370 669 PANTHER U BOX DOMAIN-CONTAINING 30 628 - -
Bach13g01370 669 FunFam RING-type E3 ubiquitin transferase 256 330 - -
Bach13g01370 669 FunFam RING-type E3 ubiquitin transferase 5 117 - -
Bach13g01370 669 MobiDBLite consensus disorder prediction 646 669 - -
Bach13g01370 669 FunFam RING-type E3 ubiquitin transferase 340 491 - -
Bach13g01370 669 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 257 330 IPR013083 -
Bach13g01370 669 Gene3D - 348 531 IPR011989 -
Bach13g01370 669 FunFam RING-type E3 ubiquitin transferase 531 650 - -
Bach13g01370 669 CDD MLKL_NTD 10 137 - -
Bach13g01370 669 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 518 560 IPR000225 GO:0005515
Bach13g01370 669 Pfam U-box domain 257 327 IPR003613 GO:0004842|GO:0016567
Bach13g01370 669 Gene3D - 7 117 IPR036537 GO:0007166
Bach13g01370 669 MobiDBLite consensus disorder prediction 331 352 - -
Bach13g01370 669 Gene3D - 532 652 IPR011989 -
Bach13g01370 669 MobiDBLite consensus disorder prediction 327 352 - -
Bach13g01370 669 SMART arm_5 507 547 IPR000225 GO:0005515
Bach13g01370 669 SMART arm_5 466 506 IPR000225 GO:0005515
Bach13g01370 669 SMART arm_5 425 465 IPR000225 GO:0005515
Bach13g01370 669 SMART arm_5 590 630 IPR000225 GO:0005515
Bach13g01370 669 SMART arm_5 548 588 IPR000225 GO:0005515
Bach13g01370 669 SMART arm_5 384 424 IPR000225 GO:0005515
Bach13g01370 669 Pfam Neurochondrin 519 638 IPR008709 -
Bach13g01370 669 SUPERFAMILY ARM repeat 355 638 IPR016024 -
Bach13g01370 669 Coils Coil 625 652 - -
Bach13g01370 669 Pfam Armadillo/beta-catenin-like repeat 384 423 IPR000225 GO:0005515
Bach13g01370 669 Pfam Armadillo/beta-catenin-like repeat 467 505 IPR000225 GO:0005515
Bach13g01370 669 CDD RING-Ubox_PUB 258 310 IPR045210 -
Bach13g01370 669 SMART Ubox_2 260 323 IPR003613 GO:0004842|GO:0016567
Bach13g01370 669 SUPERFAMILY RING/U-box 251 333 - -
Bach13g01370 669 ProSiteProfiles U-box domain profile. 256 330 IPR003613 GO:0004842|GO:0016567
Bach13g01370 669 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 395 437 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach13g01370 Bach-Chr13 17796045 17800091 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach13g01370 1 655 U-box Gene Family AT3G46510 68.986 0.0 909
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach13g01370 - - qsa:O6P43_000217 1030.78