Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach13g01253 ATGGTGTCTGACGCGAGTAAGAAGAAGGCAGCTCAGAAGAAGGCGGCGGCGGCTGCCAAGAGAGGAGGAAAAGCGGCAGCAGCAGCAGCTTCATCTAATGCAGCGGAGGCTCAGAAGGCAGCAGATAAACTAGCTAATGGAATTGGGGAAATTCAGATTTCTGATCGGACTTGCACCGGCGTCCTTTGCTCACATCCACTTTCAAGGGATATACGGATAGAGTCTCTGTCAGTGACTTTCCATGGGCACGATCTCATAGTTGATTCTGATTTGGAGCTAAATTATGGAAGACGTTATGGTTTGCTTGGATTGAATGGTTGTGGAAAATCTACTCTGCTTACTGCAATTGGTTGCCGAGAGCTTCCAATTCCTGAGCACATGGATATTTATCACCTTTCCAGAGAAATTGAAGCTTCTGACATGTCTGCATTGGGGGCTGTCATAAGCTGTGATGAGGAAAGGTTGAGATTGGAGAAAGAAGCTGAAACTTTGGCAGCACAAGATGATGGTGGTGGCGAATCTCTTGAGCGTGTTTATGAACGATTGGAAGCCATAGATGCTTCAACCGCAGAAAAGCGTGCTGCTGAAATTTTATATGGTCTTGGTTTTAACAAGCAGATGCAAGCTAAGAAGACACGTGATTTTTCTGGTGGCTGGAGAATGAGGATTGCATTAGCACGGGCTCTATTTATGAATCCAACCATTCTCTTGCTTGATGAGCCAACCAATCACCTTGATTTGGAAGCATGTGTGTGGCTGGAGGAGAATTTGAAGAAGTTTGAACGTATTCTAGTTGTGGTTTCACACTCACAGGATTTCCTTAATGGTGTCTGCACAAACATCATCCACATGCAAAACAAGAAGCTGAAGATTTATACTGGTAACTACGATCAATATGTTCAGACTCGTTCTGAATTGGAAGAGAACCAGATGAAGCAGTACAAATGGGAACAAGAGCAGATTTCCTCAATGAAGGAGTATATTGCCCGATTTGGGCATGGATCGGCAAAACTAGCTCGCCAGGCACAGAGTAAAGAAAAAACACTGGCAAAAATGGAACGGGGAGGACTTACAGAGAAGGTGGTCAAGGATAAAGTTTTGGTCTTCCGTTTTGTTGATGTGGGAAAGCTTCCACCTCCCGTTCTTCAGTTTGTTGAGGTTACCTTTGGTTACACTCCTGATAACCTCATCTACAAAAACCTTGACTTTGGGGTGGATTTAGACTCACGGATTGCACTGGTTGGACCCAATGGAGCTGGGAAGAGTACACTACTGAAGTTAATGACTGGTGATCTGGCTCCTATTGATGGTATGGTCCGCCGGCACAATCACCTTCGTATCGCACAATTCCATCAGCACTTGACTGAGAAGCTTGACTTGGAGATGTCTGCTCTCCAATTTATGATCAAAGAGTACCCTGGAAATGGGGAAGAGAGGATGAGGGCAGCTGTTGGGAGATTTGGTCTGACAGGTAAGGCCCAGGTGATGCCAATGAAGAATTTGTCTGATGGGCAGAGGAGCCGGGTGATCTTTGCATGGTTAGCTTGGAGGCAGCCTCACTTGCTACTTCTGGATGAGCCAACTAACCATTTGGATATTGAGACAATTGACTCATTAGCTGAGGCATTGAATGAATGGGATGGGGGCATGGTGCTCGTTAGTCATGATTTTAGGCTCATAAATCAGGTGGCCCATGAGATATGGGTTTGTGCCGACCAATCCGTGACTAGATGGGAGGGTGACATCATGGATTTCAAGGCGCATCTAAAGGCAAGGGCTGGTTTATCTGATTGA 1794 0.4576 MVSDASKKKAAQKKAAAAAKRGGKAAAAAASSNAAEAQKAADKLANGIGEIQISDRTCTGVLCSHPLSRDIRIESLSVTFHGHDLIVDSDLELNYGRRYGLLGLNGCGKSTLLTAIGCRELPIPEHMDIYHLSREIEASDMSALGAVISCDEERLRLEKEAETLAAQDDGGGESLERVYERLEAIDASTAEKRAAEILYGLGFNKQMQAKKTRDFSGGWRMRIALARALFMNPTILLLDEPTNHLDLEACVWLEENLKKFERILVVVSHSQDFLNGVCTNIIHMQNKKLKIYTGNYDQYVQTRSELEENQMKQYKWEQEQISSMKEYIARFGHGSAKLARQAQSKEKTLAKMERGGLTEKVVKDKVLVFRFVDVGKLPPPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRIALVGPNGAGKSTLLKLMTGDLAPIDGMVRRHNHLRIAQFHQHLTEKLDLEMSALQFMIKEYPGNGEERMRAAVGRFGLTGKAQVMPMKNLSDGQRSRVIFAWLAWRQPHLLLLDEPTNHLDIETIDSLAEALNEWDGGMVLVSHDFRLINQVAHEIWVCADQSVTRWEGDIMDFKAHLKARAGLSD 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach13g01253 597 FunFam Abc transporter f family member 1 71 335 - -
Bach13g01253 597 Pfam ABC transporter 282 358 IPR032781 -
Bach13g01253 597 Pfam ABC transporter 89 243 IPR003439 GO:0005524
Bach13g01253 597 Pfam ABC transporter 398 529 IPR003439 GO:0005524
Bach13g01253 597 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 65 318 IPR027417 -
Bach13g01253 597 CDD ABCF_EF-3 71 288 - -
Bach13g01253 597 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 71 311 IPR003439 GO:0005524
Bach13g01253 597 Gene3D - 349 595 IPR027417 -
Bach13g01253 597 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 382 597 IPR003439 GO:0005524
Bach13g01253 597 Gene3D - 71 335 IPR027417 -
Bach13g01253 597 SMART AAA_5 407 595 IPR003593 GO:0016887
Bach13g01253 597 SMART AAA_5 95 297 IPR003593 GO:0016887
Bach13g01253 597 ProSitePatterns ABC transporters family signature. 215 229 IPR017871 GO:0005524|GO:0016887
Bach13g01253 597 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 365 576 IPR027417 -
Bach13g01253 597 Coils Coil 289 309 - -
Bach13g01253 597 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 14 591 - -
Bach13g01253 597 CDD ABCF_EF-3 382 573 - -
Bach13g01253 597 FunFam ATP-binding cassette sub-family F member 3 342 596 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach13g01253 Bach-Chr13 16813410 16816950 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach13g01253 382 575 Calmodulin-binding Proteins AT2G36910 27.632 2.69e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach13g01253 K06185 - gmx:100785099 1062.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bach13g01253 13 16813410 16816950 Bach9g00225 9 1631620 1635366 BWGD
Bach13g01253 13 16813410 16816950 Bach13g01253 13 16813410 16816950 ECH