Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach13g01250 ATGCAGCGATCTGGGTTTGGCCGTGATGGCATATACAGGTCTCTCCGACCTTCCATTGTGATACCCAAGGATCCCAACCTCACCCTTGTTTCATTTCTCTTCAGAAACATTTCCTCCTACCCCAACAAACCCGCCCTGATTGATGCAGATTCCTCCGAAACCTTATCCTTCGCCCAGCTCAAGTCCATTGTTGTTAAGGTATCCCATGCTCTTCTCCATCTGGGTATCAAGAAAAATGACGTTGTTCTCTTGTTTGCACCCAATTCGATCCACTTTCCTATTTGCTTCTTCGGGGTCGTTGCCATTGGTGCCATCGCCTCTACTGCCAACCCAATCTACACGGTTGCAGAGCTTTCCAGGCAAGTGAAAGATTCCAATCCTAAGCTTGTGATAACTGTTCCTGAATTGTGGGATAAAGTCAAGGACTTCAATCTCCCGGCGGTGATTTTGGGTTCCGAAAGCCCTTCCCTTGCTGCGTCCAATTCAAAAATTACGACTTTCAATGGATTGCTTGAATTAGCTGGGTCCCCAACAGAATTTCCGGCTAACCATGTCAAACAGAGTGACACGGCGGTGCTTTTGTATTCGTCGGGCACAACGGGTGTCAGTAAAGGCGTCATTCTCACGCATGGAAATTTCATAGCTTCAAGTTTTATGATTACCTTGGATGATGAATTGATGGGTCGATTGCACGATGTGTTTATCTGCGTTTTGCCAATGTTTCATGTTTTTGGCCTCGCAGTCATCATGTTCGCGCAGCTCCAGAGAGGCAACGCTGTAGTGTCTATGAAGAAGTTCGACTTCGAGATGCTTCTGAAGGCAGTTGAGAAGTATAGAGTGACTAACCTGTGGGTTGTGCCTCCAATTATACTTGCTTTGGCTAAACATAGTGCGGTTAAGAAGTATAACCTTTCTTCATTGAGGCAAATTGGTTCCGGTGCGGCGCCTCTGGGGAAAGAATTGATGCAGGAGTGTGCCAAGAATCTTCCTCATGTTGAGGTTCTCCAGGGCTATGGCATGACTGAAACTTGTGGCATTGTTTCTGTGGAGAATTCAAGATTAGGAATTCGTCATACTGGTTCAACAGGAATGCTTGTTTCGGGAGTCGAAGCTCAAATAGTTAGTGTCGATACAATGAAGCCGCTCCCTCCTGGTCAATTGGGGGAGATATGGGTACGGGGTCCTAATATGATGCAAGGCTATTATAACAATCCACAGGCCACCAGATTGACTATAGACGATAAGGGATGGGTACATACAGGAGATCTTGGATATTTTGACGAGGAGGGGCAACTTTTTGTTGTTGATCGTATTAAAGAACTCATCAAGTATAAAGGCTTTCAGGTTGCTCCGGCTGAACTTGAAGGGCTTCTTGTTTCTCATCCTGAAATACTAGATGCTGTTGTCATCCCATATCCTGATGCCGAGGCAGGTGAGGTCCCAGTTGCATACGTTGTTCGTTCACCCAACAGTTCACTAACTGAAGAAGCTGTACAGAAGTTCATTGCTGATCAGGTTGCACCTTTCAAAAGATTGCGAAGGGTGACATTCATCAACAGTGTTCCTAAGACAGCTTCAGGAAAGATTCTGAGAAGAGAGCTTATTGATAAGGCAAGATCGAAAATATAAGATAGTGCAATTGTTTATTGCTAAGATAGAATGCAAGTTCGGAGGATCTCAA 1681 0.4521 MQRSGFGRDGIYRSLRPSIVIPKDPNLTLVSFLFRNISSYPNKPALIDADSSETLSFAQLKSIVVKVSHALLHLGIKKNDVVLLFAPNSIHFPICFFGVVAIGAIASTANPIYTVAELSRQVKDSNPKLVITVPELWDKVKDFNLPAVILGSESPSLAASNSKITTFNGLLELAGSPTEFPANHVKQSDTAVLLYSSGTTGVSKGVILTHGNFIASSFMITLDDELMGRLHDVFICVLPMFHVFGLAVIMFAQLQRGNAVVSMKKFDFEMLLKAVEKYRVTNLWVVPPIILALAKHSAVKKYNLSSLRQIGSGAAPLGKELMQECAKNLPHVEVLQGYGMTETCGIVSVENSRLGIRHTGSTGMLVSGVEAQIVSVDTMKPLPPGQLGEIWVRGPNMMQGYYNNPQATRLTIDDKGWVHTGDLGYFDEEGQLFVVDRIKELIKYKGFQVAPAELEGLLVSHPEILDAVVIPYPDAEAGEVPVAYVVRSPNSSLTEEAVQKFIADQVAPFKRLRRVTFINSVPKTASGKILRRELIDKARSKI 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach13g01250 542 FunFam Long-chain-fatty-acid--CoA ligase FadD 13 439 - -
Bach13g01250 542 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 9 537 - -
Bach13g01250 542 SUPERFAMILY Acetyl-CoA synthetase-like 21 540 - -
Bach13g01250 542 Gene3D - 440 541 IPR045851 -
Bach13g01250 542 Gene3D - 9 439 IPR042099 -
Bach13g01250 542 ProSitePatterns Putative AMP-binding domain signature. 193 204 IPR020845 -
Bach13g01250 542 FunFam 4-coumarate--CoA ligase 2 440 541 - -
Bach13g01250 542 Pfam AMP-binding enzyme 35 444 IPR000873 -
Bach13g01250 542 CDD 4CL 21 534 - -
Bach13g01250 542 Pfam AMP-binding enzyme C-terminal domain 453 528 IPR025110 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach13g01250 Bach-Chr13 16796685 16799595 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach13g01250 1 542 Monolignol Biosynthesis Gene Families AT4G05160 68.315 0.0 801
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach13g01250 K01904 - qsa:O6P43_000369 901.353
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bach13g01250 13 16796685 16799595 Bach9g00227 9 1651250 1655011 BWGD
Bach13g01250 13 16796685 16799595 Bach13g01250 13 16796685 16799595 ECH