Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach13g01240 ATGTCCTCCTCGTCGAGACCCTCTGCTTTCGATGCCCTTATGTCTGGCGCTCGCGCCGCCGCCAAAAAGAAACCCCAACCATCATCTCCCAAGAAACGGAAAATCCCTGATTCCAGTTCCACCCAAGATCCTAAAAGCATAAAAACCATTGATTCTTCTCCACTTGGGAATGCTCGTTTGTCATCAGAGCCCACAGATGACACGGACAACACCACACCTTCCAAGAATGCACCAGAATTGAGCAGCGCCTTGCGTCCCACATCTTCCAAGGAGGAGAAGATCACATTCTTGAAGAAAAACATTTCTCAATTGAAGAAGAAGCCTGGAGATTTTAATCCAAGTATGGTTGCATGTTGGAACAAAGATGAATCTCTGCCCTTTCTGTTTCTAGCATTGTCGTTCGATTTGATTGCTCAAGAGACTGGGCGGATTGTAATTACTGATATAGCTTGTAATATGTTGAGGACTGCCATGCATACTGCACCTGATGGTTTGGTGGCTCTAGTTTATCTTTCCGCAAATAGGATTGATCCCGCACACGAGGGTTTGGAGTTGGGAATAGGGGATTCTTCCATCATTAAAGCGCTTGCAGAGGCATTTGGAAGGACTGAGCCACAGATAAAAAGTCGATATAAGGAAAAAGGTGATTTGGGTCTTGTTGCCAAAGCGTGTCGCTCATCTCAATCTATGATGCGGAAGCCTGATGCTTTAACTGTTACGAAGGTTTACAACACGTTCCGTCTAATTGCCAAGGAATCTGGAAAAGACAGTCAAGAGAAGAAAAAGAATCATATGAAGGCACTTCTTGTTGCTGCTACTGATTGTGAACCTCTATATCTAATTCGCTTACTTCAGGCAAAGCTGCGAATTGGCCTGGCAGAGCAAACTCTCTTAGCTGCTTTAGGACAAGCTGCTGTGTACAATGAAGAACATTCTACACCACCTCCGAAAATTCAGTCTCCTTTAGAAGAGGTCCTCTGGTTTGATTTGCTTCAGGCTGCAAAGATTGTTAAACAAGTATTTTCTGTTCTTCCTGTTTATGACAAAATAGTCCCTGCCCTGCTTAGTGGTGGTATATGGAAACTTCCAGAGACATGCAACTTTACGCCTGGTGTTCCAGTTGGACCTATGCTATCTAAAGCAACCAAGAGTGTATCTGAAATTTTAAATAAATTCCAGGATGTTGAGTTTACCTGTGAATACAAATATGATGGAGAGCGTGCCCAGATACATTACATGGAGAATGGATCGGTTGAAATTTACAGTAGAAATGCAGAACGGAACACTGGAAAGTATCCTGATGTTGTTGCTGCAGTTTCAAGGTTAAAGAAACCATCTGTATCATCATTTGTTCTTGATTGTGAAATTGTTGCATATGACAGTGAAAAACAGAAAATTCTTCCTTTCCAGGTACTCAGTACTCGAAAGAGGAAAGATGTGGATATAAATGAGATAAAGGTCAATGTTTGCATATTTGCTTTTGATTTGTTGTATCTTGATGGCCAACCACTACTTCAGGAACACCTGAGAATCCGCAGAGAGCATCTTCATGCCTTGTTTGAGGAAGAAACTGGATTTTTTCAGTTTGCAACAGCAATAACAACAAATGATATTGAGGAAATACAGAAATTTCTTGATGCAGCTGTTGATGCAAGTTGTGAGGGCTTAATTATTAAAACATTAGATAAAGATGCTACATATGAACCTTCCAAGCGGTCACTCAACTGGCTAAAATTGAAGAAAGATTATCTGGAAAACATAGGGGATTCGCTAGATTTGGTACCTATTGCTGCTTTCCATGGTCGTGGGAAACGTACCGGGGTCTATGGTGCCTTTCTCCTTGCTTGCTATGATGGCAATAGTGAACAGTTCCAAAGCATTTGTAAGATAGGTACTGGATTCTCTGAAACAATGCTTGAAGAACGTTCTGCTAGTCTTCGTTCAAAAGTGATTCCCAAACCCAAGCCATACTATCGATATGCAGATACAATCAATCCTGATGTATGGTTTGAAGCCTGTGAGGTGTGGGAGGTGAAAGCAGCAGACTTGACTATTAGCCCTGTTCATCGCGCTGCAGTGGGCATAGTTGATTCAGATAAGGGAATTTCACTTCGATTTCCTCGTCTAGTTCGAGTTCGGGATGACAAAGCTCCTGAAGAAGCTTCCCGAGCAGGTAAAGGACCATCTTCTTTTCTAGTGAAAGTTGCAGAGATGTATAATGCTCAAAAGCACAACCACCAGAACAATCCAGATGACAGCGAAGATGATTGA 2271 0.4223 MSSSSRPSAFDALMSGARAAAKKKPQPSSPKKRKIPDSSSTQDPKSIKTIDSSPLGNARLSSEPTDDTDNTTPSKNAPELSSALRPTSSKEEKITFLKKNISQLKKKPGDFNPSMVACWNKDESLPFLFLALSFDLIAQETGRIVITDIACNMLRTAMHTAPDGLVALVYLSANRIDPAHEGLELGIGDSSIIKALAEAFGRTEPQIKSRYKEKGDLGLVAKACRSSQSMMRKPDALTVTKVYNTFRLIAKESGKDSQEKKKNHMKALLVAATDCEPLYLIRLLQAKLRIGLAEQTLLAALGQAAVYNEEHSTPPPKIQSPLEEVLWFDLLQAAKIVKQVFSVLPVYDKIVPALLSGGIWKLPETCNFTPGVPVGPMLSKATKSVSEILNKFQDVEFTCEYKYDGERAQIHYMENGSVEIYSRNAERNTGKYPDVVAAVSRLKKPSVSSFVLDCEIVAYDSEKQKILPFQVLSTRKRKDVDINEIKVNVCIFAFDLLYLDGQPLLQEHLRIRREHLHALFEEETGFFQFATAITTNDIEEIQKFLDAAVDASCEGLIIKTLDKDATYEPSKRSLNWLKLKKDYLENIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDGNSEQFQSICKIGTGFSETMLEERSASLRSKVIPKPKPYYRYADTINPDVWFEACEVWEVKAADLTISPVHRAAVGIVDSDKGISLRFPRLVRVRDDKAPEEASRAGKGPSSFLVKVAEMYNAQKHNHQNNPDDSEDD 756
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach13g01240 756 CDD Adenylation_DNA_ligase_I_Euk 365 583 - -
Bach13g01240 756 Pfam ATP dependent DNA ligase domain 376 580 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Bach13g01240 756 Pfam ATP dependent DNA ligase C terminal region 605 716 IPR012309 GO:0003910|GO:0006281|GO:0006310
Bach13g01240 756 CDD OBF_DNA_ligase_I 588 741 - -
Bach13g01240 756 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 22 754 - -
Bach13g01240 756 Gene3D - 386 585 - -
Bach13g01240 756 Gene3D DNA ligase/mRNA capping enzyme 405 530 - -
Bach13g01240 756 MobiDBLite consensus disorder prediction 1 91 - -
Bach13g01240 756 FunFam DNA ligase 585 752 - -
Bach13g01240 756 FunFam DNA ligase 376 582 - -
Bach13g01240 756 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 400 408 IPR016059 GO:0003909
Bach13g01240 756 MobiDBLite consensus disorder prediction 32 89 - -
Bach13g01240 756 Coils Coil 87 107 - -
Bach13g01240 756 FunFam DNA ligase 103 378 - -
Bach13g01240 756 ProSiteProfiles ATP-dependent DNA ligase family profile. 482 618 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Bach13g01240 756 NCBIfam ATP-dependent DNA ligase 184 724 IPR000977 GO:0003910|GO:0005524|GO:0071897
Bach13g01240 756 SUPERFAMILY Nucleic acid-binding proteins 588 723 IPR012340 -
Bach13g01240 756 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 368 586 - -
Bach13g01240 756 Pfam DNA ligase N terminus 126 301 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Bach13g01240 756 Gene3D - 84 378 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Bach13g01240 756 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 110 367 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Bach13g01240 756 ProSitePatterns ATP-dependent DNA ligase signature 2. 554 580 IPR016059 GO:0003909
Bach13g01240 756 Gene3D - 589 727 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach13g01240 Bach-Chr13 16719191 16724185 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach13g01240 3 756 Core DNA Replication Machinery Family AT1G08130 68.010 0.0 1058
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach13g01240 K10747 - qsa:O6P43_028431 1121.69