Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach13g01235 ATGGAGATGGAAGCTTGCACTGGCATGGATGAATTTATGGGGTCGTCGAATATCAACGATGCCACACAGATCCTAATCAAAGGTAAGCGCACCAAGCGGCAGAGGCCTTCGTCACCTTCTCCTCCTTGTGCTGTCAACGTTGCCGTTGCCACCAATACTAATAATAATACCATCATCACTTCTAGCTCCTCGAGTGCTTCCGAGGATGGTACTCATGTTATTAGTGGTGGTGGAGGCGGTGATTATGGTTCCTTTTCCTCAACCACAACAACCTACGAGAGCACCGAGGAAGAAGAAGACATGGCTAAATGTTTGATTCTCTTGGCTCAAGGTGACGGCGCTGCCGCTTCTCGTCTTCATAAAATTCATCATCCACATCAAATTCAAGGTGAAGCCGCTAATAAGACAGAACAAAAGGGTAGCAGCAGCAGCCGAATTAGATTTGCTGAGATGACCAGTTCTGTCTCTGCCACCGCTAGCATCAAAATGGGTTTCGATATCTATGAGTGCAAAACATGTAACCGGACATTCTCTTCGTTTCAAGCGCTGGGCGGCCACAGGGCAAGCCACAAAAAGCCTAAGGTATCTTCTCCTTCTCCAGACGAAAAGAAACCACCATCACCACCGGCGTTAACGTTACCCCAACCTAACTATGATTTTGAAGAAGCCTGTATCAAAACTGGGCCCCATCAAATTTCCCTTCAATTGCCAAGTAATAGATCAGGTTTCAGTGCCAACAGCAAGGCGGCGGTCAAGTTACACGAGTGTTCGATATGTGGGTCAGAATTCACATCTGGGCAAGCATTGGGTGGGCACATGAGGAGACATAGGGCAGCGACAAGAACTAGTTCTGATCAGGTGGCGGCGACCATGGGTCCCATTGAAGCAGCAAGTTGTGAAACCTCCACCGCCGTTAACGTTAACTTTCAAGTTAAGCCCAGGAATATTCTACAATTGGATCTTAACCTGCCGGCGCCTGAAGACGATCTCCGGGAGTCCAAGTTTCAGTTTACCCCAACACAAAAAGCTCTGATGCTGTCTGCTCCGGCTTTGGTGGGTTGCCATTATTAG 1071 0.4818 MEMEACTGMDEFMGSSNINDATQILIKGKRTKRQRPSSPSPPCAVNVAVATNTNNNTIITSSSSSASEDGTHVISGGGGGDYGSFSSTTTTYESTEEEEDMAKCLILLAQGDGAAASRLHKIHHPHQIQGEAANKTEQKGSSSSRIRFAEMTSSVSATASIKMGFDIYECKTCNRTFSSFQALGGHRASHKKPKVSSPSPDEKKPPSPPALTLPQPNYDFEEACIKTGPHQISLQLPSNRSGFSANSKAAVKLHECSICGSEFTSGQALGGHMRRHRAATRTSSDQVAATMGPIEAASCETSTAVNVNFQVKPRNILQLDLNLPAPEDDLRESKFQFTPTQKALMLSAPALVGCHY 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach13g01235 356 MobiDBLite consensus disorder prediction 126 145 - -
Bach13g01235 356 MobiDBLite consensus disorder prediction 183 216 - -
Bach13g01235 356 PANTHER ZINC FINGER PROTEIN ZAT5 88 339 - -
Bach13g01235 356 Pfam C2H2-type zinc finger 168 193 - -
Bach13g01235 356 Pfam C2H2-type zinc finger 254 278 - -
Bach13g01235 356 SUPERFAMILY beta-beta-alpha zinc fingers 167 276 IPR036236 -
Bach13g01235 356 ProSiteProfiles Zinc finger C2H2 type domain profile. 254 281 IPR013087 -
Bach13g01235 356 ProSitePatterns Zinc finger C2H2 type domain signature. 170 190 IPR013087 -
Bach13g01235 356 ProSiteProfiles Zinc finger C2H2 type domain profile. 168 195 IPR013087 -
Bach13g01235 356 ProSitePatterns Zinc finger C2H2 type domain signature. 256 276 IPR013087 -
Bach13g01235 356 Gene3D Classic Zinc Finger 166 276 - -
Bach13g01235 356 MobiDBLite consensus disorder prediction 131 145 - -
Bach13g01235 356 SMART c2h2final6 168 190 IPR013087 -
Bach13g01235 356 SMART c2h2final6 254 276 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach13g01235 Bach-Chr13 16687179 16688249 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach13g01235 12 356 C2H2 Transcription Factor Family AT2G28200 42.816 2.36e-58 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bach13g01235 zf-C2H2_6 4e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach13g01235 - - qsa:O6P43_028439 276.559
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bach13g01235 13 16687179 16688249 Bach9g00243 9 1761613 1762701 BWGD
Bach13g01235 13 16687179 16688249 Bach13g01235 13 16687179 16688249 ECH
Bach13g01235 13 16687179 16688249 Bach8g02758 8 34265394 34266353 ECH
Bach13g01235 13 16687179 16688249 Bach9g00243 9 1761613 1762701 ECH
Bach8g02758 8 34265394 34266353 Bach13g01235 13 16687179 16688249 ECH
Bach1g02473 1 36124160 36124945 Bach13g01235 13 16687179 16688249 ECH