Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach13g01233 ATGAATCCAAGGGCAATATCTGGTTTCTCAAATCTTCCTCAAGGGATGCAGACATTTGGTGTAGATGGAGATTTAATTTCATCTTCCGTTGAAGTAAACTCTGGGTCAGGTTCATACTCTAGCTCCCTCCTCTTCAATCTATCTCTGCTCAAAGACAAGGTTAGTCAGGTGCAGTCACTGGTGGGTTTTCTTATCTCCCCAGATCAAAGCCCACCCGAGTCAACTTCCATGGCTGTAGCCAGCATCAACTCAATAGTCCAAGACATCATAGCCACTGCCACTTCCATGATGTTCATTTGCCAACAAATGTCTCTTGGTTCCTGTCCTCCAGGTACTACCACTAATTGCACTGATGAATTGCACCAACAGCACCAATCCCATGATAGCTTGCCTCAATTAAACTTTACCAATAATAATCGACAAGTTACCAACATAGACCAAGATAGAGTGCAGAGTTTCTTTTCTAGTACTGAAACCTTGGACTGGTTTGGTAAAAGCTATAATAATACAAATTGTCTTAAGGATGATGATCCAAGTGTTGCAATTAGTCATAGAACTAATAATGGTAAGGGAGAATTGTCTTTAGAGGATGATGATCAAACAAATGCAGGGTTCAAAGGGCTTTCGCCAAAGAACTATGATATTATTGAATTGGATGCTGAGGATTTGTTAGCTAAGTACACACATTATTGCCAAGTTTGTGGAAAAGGGTTTAAGCGCGATGCTAATTTAAGGATGCACATGAGAGCTCATGGAGATGAGTACAAAACGACTGCTGCCTTGAGCAACCCAATGAAGAATAAGAGGAAATTGGAGTGTTTGATGAGTACAAGGCCTAAGAAATATTCATGCCCACAATTGGGTTGCAGGTGGAACAGAAAGCATGCCAAGTTCCAGCCTTTGAAGTCTATGATTTGTGTGAAGAATCATTACAAGAGAAGCCATTGCCCTAAAATGTACGTGTGCAAGATGTGCAACCAAAAACAGTTCTCTGTGCTTTCTGATCTGAGGACTCATGAGAAGCACTGTGGAGATCTCAAGTGGCAGTGCTCCTGTGGCACCACATTTTCCAGGAAAGATAAGCTTATGGGACATGTTGCTTTGTTCGTTGGACACTCCCCAGCTATCAATGGCTTGTCATTTTCAGGAAATTAG 1155 0.4173 MNPRAISGFSNLPQGMQTFGVDGDLISSSVEVNSGSGSYSSSLLFNLSLLKDKVSQVQSLVGFLISPDQSPPESTSMAVASINSIVQDIIATATSMMFICQQMSLGSCPPGTTTNCTDELHQQHQSHDSLPQLNFTNNNRQVTNIDQDRVQSFFSSTETLDWFGKSYNNTNCLKDDDPSVAISHRTNNGKGELSLEDDDQTNAGFKGLSPKNYDIIELDAEDLLAKYTHYCQVCGKGFKRDANLRMHMRAHGDEYKTTAALSNPMKNKRKLECLMSTRPKKYSCPQLGCRWNRKHAKFQPLKSMICVKNHYKRSHCPKMYVCKMCNQKQFSVLSDLRTHEKHCGDLKWQCSCGTTFSRKDKLMGHVALFVGHSPAINGLSFSGN 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach13g01233 384 ProSitePatterns Zinc finger C2H2 type domain signature. 231 251 IPR013087 -
Bach13g01233 384 SMART c2h2final6 282 315 IPR013087 -
Bach13g01233 384 SMART c2h2final6 320 342 IPR013087 -
Bach13g01233 384 SMART c2h2final6 229 251 IPR013087 -
Bach13g01233 384 SUPERFAMILY beta-beta-alpha zinc fingers 227 255 IPR036236 -
Bach13g01233 384 Pfam Zinc finger, C2H2 type 229 251 IPR013087 -
Bach13g01233 384 Gene3D Classic Zinc Finger 215 285 - -
Bach13g01233 384 ProSiteProfiles Zinc finger C2H2 type domain profile. 229 256 IPR013087 -
Bach13g01233 384 MobiDBLite consensus disorder prediction 183 202 - -
Bach13g01233 384 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 37 377 IPR044300 GO:0010044|GO:0010447
Bach13g01233 384 FunFam Zinc finger protein 574 228 253 - -
Bach13g01233 384 Gene3D Classic Zinc Finger 318 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach13g01233 Bach-Chr13 16677702 16678856 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach13g01233 40 375 C2H2 Transcription Factor Family AT5G22890 50.585 1.44e-109 324
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bach13g01233 zf-C2H2 0.00015 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach13g01233 - - gmx:100802769 465.307
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bach13g01233 13 16677702 16678856 Bach9g00244 9 1768689 1769831 BWGD
Bach13g01233 13 16677702 16678856 Bach13g01233 13 16677702 16678856 ECH