Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach13g01175 ATGGGTTTCAGGGAATGTAATATTGAAGAAGATTTTCATCCCCCAACTTTCATTGAATGGCTCAAGCCATCTTCTTCTCCTTCATCACTCTCCTCTTCGTTATCGTCAGCTCCTTCTCTGGTTGATCAACATGAGCTTGAGAGGGAGACTATCCAGTTTTTGCCAATTTTAAGTGGGTTCACCCCAAAAGAGGAAGGTGTTGGAGTGCAACAGGAGATTTTAGGAGTGAAAGAAGAGAAAGTAGAGCAGGCGACTGTGGCTTTGCACATTGGATTACCTAACCCAGAAGAAGATCACCCAGAGGCTGATGAGAAGAAGGTTTTTGATGTTAAGGGAGAAGAGTCCGTGAAGAGAAGCTTCCATGGCTGCTCTTTTAACCCAGAAAGAAGGTTCTGGATCCCAACTCCTGCTCAGATCCTTGTTGGGCCGATGCAGTTTGCTTGCTCCATATGCGGCCAGACCTTCAATAGATATAACAACATGCAGATGCATATGTGGGGGCATGGCTCCGAATTTAGAAAAGGGCCAGACTCGCTTAGAGGAACACAACCAGCAGCAATGCTGAGGCTACCTTGCTATTGCTGTGCACAAGGCTGCAAGAACAACATCAACCATCCAAGAGCAAAGCCACTGAAAGATTTCAGAACCCTCCAGACCCACTACAAGAGAAAGCATGGAGCAAAACCCTTCATGTGCAGAAAATGTGGGAAAACATTTGCAGTCAAAGGAGATTGGAGGACTCATGAGAAGAACTGCGGCAAACTATGGTACTGCACTTGTGGTTCAGATTTCAAACACAAAAGATCTCTCAAAGATCACATCAGATGCTTCGGAAATGGTCACTCCCCACATCCTTCTCTTAAAGGTTTTGAAGATGAGAAGGAATGCATTACTGGCTCTGAAGATGAAGTTCCCCATACTTGA 924 0.4524 MGFRECNIEEDFHPPTFIEWLKPSSSPSSLSSSLSSAPSLVDQHELERETIQFLPILSGFTPKEEGVGVQQEILGVKEEKVEQATVALHIGLPNPEEDHPEADEKKVFDVKGEESVKRSFHGCSFNPERRFWIPTPAQILVGPMQFACSICGQTFNRYNNMQMHMWGHGSEFRKGPDSLRGTQPAAMLRLPCYCCAQGCKNNINHPRAKPLKDFRTLQTHYKRKHGAKPFMCRKCGKTFAVKGDWRTHEKNCGKLWYCTCGSDFKHKRSLKDHIRCFGNGHSPHPSLKGFEDEKECITGSEDEVPHT 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach13g01175 307 ProSiteProfiles Zinc finger C2H2 type domain profile. 230 250 IPR013087 -
Bach13g01175 307 FunFam Zinc finger protein WIP2 199 281 - -
Bach13g01175 307 ProSitePatterns Zinc finger C2H2 type domain signature. 148 168 IPR013087 -
Bach13g01175 307 Gene3D Classic Zinc Finger 188 278 - -
Bach13g01175 307 PANTHER ZINC FINGER PROTEIN WIP2 24 296 IPR043584 GO:0003700|GO:0010468
Bach13g01175 307 SMART c2h2final6 230 250 IPR013087 -
Bach13g01175 307 SMART c2h2final6 146 168 IPR013087 -
Bach13g01175 307 SMART c2h2final6 193 225 IPR013087 -
Bach13g01175 307 Gene3D Classic Zinc Finger 143 168 - -
Bach13g01175 307 Pfam Zinc finger, C2H2 type 146 165 IPR013087 -
Bach13g01175 307 ProSiteProfiles Zinc finger C2H2 type domain profile. 146 173 IPR013087 -
Bach13g01175 307 SUPERFAMILY beta-beta-alpha zinc fingers 117 169 IPR036236 -
Bach13g01175 307 SUPERFAMILY beta-beta-alpha zinc fingers 216 250 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach13g01175 Bach-Chr13 16204194 16206617 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach13g01175 12 298 C2H2 Transcription Factor Family AT1G08290 56.456 3.19e-119 344
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bach13g01175 zf-C2H2 0.013 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach13g01175 - - gmx:100802773 477.248
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bach13g01175 13 16204194 16206617 Bach9g00308 9 2228148 2231098 BWGD
Bach13g01175 13 16204194 16206617 Bach13g01175 13 16204194 16206617 ECH