Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach13g01162 ATGCCACGTGGGAAGGCAAATTCTTCATCAGTCACTAAGCCAGACGAACCTGAAAATCCAACTGAGTCAGATGAGAAGATTGATCTTGATGAGGCAAATGATCATGAGGAAGCAATGGAAGAAGAAATTGAATATGAAGAAGTAGAGGAGGAAGAGGAAGCGGAAGAGATAGAAGAGGAGGTGGAAGAGGAGGAGGAGGATCCAGAGGAAGAAGAGGTGGAGGAAGTGGAGGATGATGATGCCAGTCATGCCATGCAAAACATGAGCAGTGATGAGGGCACAAAGGCGGAAGATGAGGATGAGAAGAAGAAACATGCTGAACTTCTTTCTCTTCCTCCTCATGGCTCTGAAGTATACATTGGTGGCATTCCTCATGATGCCTCAACAGAAGATTTGAGAGCTTTTTGTGAGCCAATTGGAGAAGTTGTAGAGGTTCGAGTTATGAAAGGAAAAGATTCTTCTGAGAACAAGGGCTTCGGTTTTGTGACTTTTAGAAATGTGGAATTGGCTTCTAAAGCTATAGATGACCTGAATAATAAAGAATTTAAGGGTAAAAAAATAAAATGTTCAACGTCTCAAGCAAGACAACGTCTTTTCATTGGTAATGTTCCTAGAAGTTGGGGTGAGGAAGATCTGAGGAAGGTTATAGCTGAGATTGGGCCTGGAGTTACTGCTGTAGAATTAGTCAAGGATATGAAGAACACAAAAAATAACCGTGGCTTTGCTTTTATTGATTATTACAATCATGCATGTGCCGAGCATTCAAGGCAAAAGATGATGAACCCAAAATTTAAGCTAGGTGACAATGCTCCAACAGTGAGCTGGGCTGACCCAAAAAATGCTGATTCCTCTGCTGCATCACAGGTAAAAGCAGTATATGTGAAGAACTTACCTAAGAATATAACTCAAGACCAGTTAAAGAAGCTTTTTGAACACCACGGGAAGATCACTAAGGTGGTTCTGCCACCAGCAAAGTCTGGACTGGAAAAGAACAGGATTGGTTTTGTACATTTTGCTGAGAGATCAAGTGCTATGAAAGCACTAAAAAACACCGAAAGATATGAATTAGAAGGTCAAGTTTTAGAGTGTTCTCTTGCAAAACCACAGGCTGATCAAAAGTCTGGAGGATCAAATACACAGAAATCAGGATTGCTTCCTAGCTATCCTCCACGTGTTGGTTATGGTATTATTGAGGGTGGCTATGGTGCAGGATATGGTGCTGCAGGTCTTGGACAGCCATTGATATATGGAAGGGGTCCAACTCCTGCTGGGATGGCCATGATGCCCATGTTTCTGCCTGACGGACGAATTGGCTATGTCCTGCAACAACCAGGAGTCCAGCCACAAACCCCACCTTCACATCAGAGAGGTGGCAGGATTGGTAGTGGGAATGGTTCCAAGAATGCTGGCAGTTCAAGCAAGGGAAGACATGGCAATGATGGCGGCCAAGGGCGCAGATACCGCCCATATTAG 1473 0.4372 MPRGKANSSSVTKPDEPENPTESDEKIDLDEANDHEEAMEEEIEYEEVEEEEEAEEIEEEVEEEEEDPEEEEVEEVEDDDASHAMQNMSSDEGTKAEDEDEKKKHAELLSLPPHGSEVYIGGIPHDASTEDLRAFCEPIGEVVEVRVMKGKDSSENKGFGFVTFRNVELASKAIDDLNNKEFKGKKIKCSTSQARQRLFIGNVPRSWGEEDLRKVIAEIGPGVTAVELVKDMKNTKNNRGFAFIDYYNHACAEHSRQKMMNPKFKLGDNAPTVSWADPKNADSSAASQVKAVYVKNLPKNITQDQLKKLFEHHGKITKVVLPPAKSGLEKNRIGFVHFAERSSAMKALKNTERYELEGQVLECSLAKPQADQKSGGSNTQKSGLLPSYPPRVGYGIIEGGYGAGYGAAGLGQPLIYGRGPTPAGMAMMPMFLPDGRIGYVLQQPGVQPQTPPSHQRGGRIGSGNGSKNAGSSSKGRHGNDGGQGRRYRPY 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach13g01162 490 MobiDBLite consensus disorder prediction 21 79 - -
Bach13g01162 490 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 118 188 IPR000504 GO:0003723
Bach13g01162 490 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 292 361 IPR000504 GO:0003723
Bach13g01162 490 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 198 261 IPR000504 GO:0003723
Bach13g01162 490 CDD RRM_SF 118 190 - -
Bach13g01162 490 Gene3D - 279 409 IPR012677 -
Bach13g01162 490 MobiDBLite consensus disorder prediction 1 103 - -
Bach13g01162 490 SUPERFAMILY RNA-binding domain, RBD 286 392 IPR035979 GO:0003676
Bach13g01162 490 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 116 194 IPR000504 GO:0003723
Bach13g01162 490 Coils Coil 29 74 - -
Bach13g01162 490 Gene3D - 28 196 IPR012677 -
Bach13g01162 490 SMART rrm1_1 197 274 IPR000504 GO:0003723
Bach13g01162 490 SMART rrm1_1 291 364 IPR000504 GO:0003723
Bach13g01162 490 SMART rrm1_1 117 190 IPR000504 GO:0003723
Bach13g01162 490 SUPERFAMILY RNA-binding domain, RBD 113 282 IPR035979 GO:0003676
Bach13g01162 490 FunFam RNA recognition motif-containing protein 21 196 - -
Bach13g01162 490 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 290 368 IPR000504 GO:0003723
Bach13g01162 490 MobiDBLite consensus disorder prediction 443 478 - -
Bach13g01162 490 MobiDBLite consensus disorder prediction 1 16 - -
Bach13g01162 490 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 196 278 IPR000504 GO:0003723
Bach13g01162 490 Gene3D - 197 277 IPR012677 -
Bach13g01162 490 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 16 481 - -
Bach13g01162 490 MobiDBLite consensus disorder prediction 442 490 - -
Bach13g01162 490 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 197 277 - -
Bach13g01162 490 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 279 388 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach13g01162 Bach-Chr13 16082925 16086510 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach13g01162 123 448 Eukaryotic Initiation Factors Gene Family AT4G34110 26.796 5.84e-16 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach13g01162 K13161 - qsa:O6P43_000471 706.827