Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach13g01135 ATGTCGGGTACGCGAGCTCCGACCACCTCGTCTCAGCCGCCCGACCAAATAATGCACTCTATGAAACGCCAACTCTTATTTTCATCGATGAAGTCGCCCTTTCTAGCTCCAGGAGATTATCATCGTTTCACGCCTGATAATCGCCGAGCTACTGAGCGAGAAGCCGAGGCCGTCGTTGTTAAGTCTCCCCAATTGAAGCGGAAGAATGATGCAGCCAATTATGAAGCTGATTCTGGTGATAGGATGGCTCCTAGATCCATTGAAGCAGCTAACAGTCCCTTTCAGACACCTACATCGGGAAAGCTGGGCAAGGGTGGTAAGGGCTCAAGAATTACAAAATACAGCAGATCTGGACCTCAAACCCCAGGTTCCAATATAGGTTCTCCTTCTGCCAATAACCTCACTCCAACTGGGCCTTGTCGTTATGACAGCTCTTTAGGTCTTTTGACGAAGAAGTTCATAAATTTGATCAAACAAGCAGAGGATGGGATTCTTGACTTGAATAAAGCTGCTGACACGTTGGAGGTCCAAAAGAGGAGGATATATGACATAACAAATGTTCTTGAGGGAATTGGTCTTATAGAAAAGAAGCTTAAAAACAGAATTCAATGGAAGGGACTGGATGTTTCAAGGCCAGGGGAGGCCGATGATAATTTCACTAGTTTACAGGCAGAAGTTGAAAATCTTTCTATAGAGGAGCACCGACTAGATGAACAAATAAGGGAGATGCAAGAGAGACTAAGGGATCTTAGTGAAGATGAAAATAATCAGAAGTGGCTTTTTGTCACCGAGGAAGATATTAAATGTTTGCCCTGCTTCCAGAATGAAACGTTAATTGCAATTAAAGCTCCTCATGGTACCACTCTGGAAGTCCCTGATCCTGATGAGGCTGTCGATTATCCCCAGAGGAGATATAGGATAGTCTTGAGAAGCACAATGGGTCCAATAGACGTTTACCTTGTTAGTCAATTTGAAGAGAAGTTTGAGGAGATTAATGGTATTGAAACAGCACCCGCACCCAATCTTCCTTCCACTCCAGAGTATGACAAGCATCCGGCATCAGTGGTTACAGAGGTAAGAAGGAAGGACATAGAAGAGCAGGGACAAGATGGTCGCGGAGCTTATTCAGATATTAGTGCCTCACAGGACTTCATGACTGGGATCATGAAGATCGTTCCTTCAGATGTCAATAGCGAAGCTGATTACTGGCTTTTATCAGATGCTGATGTTAGCATTACAGACATGTGGAGCTCAGAACCTGGAGTCGAATGGAATGAATTGGATACCATTCATGAAGATTATAGCATGACGAATGTAAGCGCAACGCGACCCCAAACTCCTCCTTCTAACACTAGTGAAGTGCCTTCGGCAGCTAATCCCACTGGAGGTTGA 1392 0.4483 MSGTRAPTTSSQPPDQIMHSMKRQLLFSSMKSPFLAPGDYHRFTPDNRRATEREAEAVVVKSPQLKRKNDAANYEADSGDRMAPRSIEAANSPFQTPTSGKLGKGGKGSRITKYSRSGPQTPGSNIGSPSANNLTPTGPCRYDSSLGLLTKKFINLIKQAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRPGEADDNFTSLQAEVENLSIEEHRLDEQIREMQERLRDLSEDENNQKWLFVTEEDIKCLPCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDVYLVSQFEEKFEEINGIETAPAPNLPSTPEYDKHPASVVTEVRRKDIEEQGQDGRGAYSDISASQDFMTGIMKIVPSDVNSEADYWLLSDADVSITDMWSSEPGVEWNELDTIHEDYSMTNVSATRPQTPPSNTSEVPSAANPTGG 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach13g01135 463 CDD E2F_DD 217 323 IPR032198 GO:0046983
Bach13g01135 463 Gene3D - 213 323 - -
Bach13g01135 463 FunFam E2F transcription factor 1 135 208 - -
Bach13g01135 463 MobiDBLite consensus disorder prediction 1 20 - -
Bach13g01135 463 SUPERFAMILY "Winged helix" DNA-binding domain 141 204 IPR036390 -
Bach13g01135 463 MobiDBLite consensus disorder prediction 436 463 - -
Bach13g01135 463 MobiDBLite consensus disorder prediction 35 138 - -
Bach13g01135 463 Coils Coil 219 256 - -
Bach13g01135 463 PANTHER TRANSCRIPTION FACTOR E2F 84 422 IPR015633 GO:0000978|GO:0006357
Bach13g01135 463 Pfam E2F/DP family winged-helix DNA-binding domain 143 206 IPR003316 GO:0005667|GO:0006355
Bach13g01135 463 Gene3D - 135 208 IPR036388 -
Bach13g01135 463 SMART E2F_TDP_2 141 206 IPR003316 GO:0005667|GO:0006355
Bach13g01135 463 Pfam E2F transcription factor CC-MB domain 222 322 IPR032198 GO:0046983
Bach13g01135 463 MobiDBLite consensus disorder prediction 42 75 - -
Bach13g01135 463 SUPERFAMILY E2F-DP heterodimerization region 218 323 IPR037241 -
Bach13g01135 463 MobiDBLite consensus disorder prediction 113 138 - -
Bach13g01135 463 Coils Coil 157 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach13g01135 Bach-Chr13 15936197 15940254 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach13g01135 16 462 E2F-DP Transcription Factor Family AT5G22220 56.842 8.90e-158 453
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Bach13g01135 E2F_CC-MB 2.7e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach13g01135 K06620 - gmx:100819817 698.738