Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach13g00738 ATGGATCCCACCAAGAAGCGTAAGATTGACGAAAATGGCGTTGTACCTGTCGATTCCGATCTCAAGCTTTCCCCTGCTGACGCTCGTAAAATTATCGAGCGCTTCAATCCTGAACAGCTCATCGATATTCTACAGGACGCCGTCGTTCGCCACGCTGATGTCCTCGATGCCGTCCGGTCGATTGCAGATCCTGATGTCGCTCAGCGTAAGTTGTTTATTCGTGGGCTTGGGTGGGACACCACCACCGACGGCCTCCGCTCTCTTTTCTCAATCTACGGTGAGCTTGAAGAGGCTGTGGTGATTACCGATAAGGCCACCGGTAAATCTAGGGGTTATGGATTTGTTACTTTTAAGCACGTCGATGGTGCTTTGCTGGCTCTCAAGGAGCCTAGCAAGAGGATAGATGGTCGTGTCACTGTTACACAGCTTGCGGCAGCAGGAAATTCGGGTTCGAATACGAACGCGATAGACATTGCGTTGAGGAAAATATACGTGGCTAATGTGCCGTCGGAGCTGCCGGCTGATAAACTATTGGCTCATTTTTCGCTGTATGGAGAGATTGAAGAAGGACCGTTGGGCTTTGACAAGCAGACGGGTAAGTCAAAGGGGTTTGCTTTGTTTGTTTATAAGACAGCGGAGGGGGCACAAGCAGCACTAGTGGATCCGGTGAAGACTGTTGAGGGAAAGCAGCTGACTTGCAAGTTGGCGATAGATGGGAAGCAAGGGAAACGGGGGGGTGGCCCAATCGGAGATGGAGTGCAGGGTCCTGGAAATTCTCATGGGGACGGGATCGGTATGGCTCAACCGTCTTCTATACCAGGGTCGTATGCTGGATCCGTTGGCTATGGTGGGTTTACGGGTGGACTTCAAGGTCAGCCACCTCTGGGTAGTCATCCTCTGAATTCATCCTTGGGTGGTCCGGGATTGTCCTCGGTTGGTAATCAGGCTCCCTCTTCGTTAGGTGGTACTGGTGGGTACGGTGGACTTGGTGGTCCTTATGGCGGTTATGGTGGGACCGGGACATCTGGTTTTGGTGGATTGAGCGGAGGTAGTGGTGCATTGGGTGGTGCTGGTTTGTATAGATTGCCGACTTCAACTGGAATACCCGCTGTAGGCTATCCAGAGAGTGGACATTACGGATTATCATCATCTGGGTACCCGAATCAGCATCACCAGCCTACTGGAGCGTCAGCTTTACCTAGAGTTCCCCCTGGCCCAATGTATCCAAATGTGCCCCCTTACTACTGA 1248 0.5208 MDPTKKRKIDENGVVPVDSDLKLSPADARKIIERFNPEQLIDILQDAVVRHADVLDAVRSIADPDVAQRKLFIRGLGWDTTTDGLRSLFSIYGELEEAVVITDKATGKSRGYGFVTFKHVDGALLALKEPSKRIDGRVTVTQLAAAGNSGSNTNAIDIALRKIYVANVPSELPADKLLAHFSLYGEIEEGPLGFDKQTGKSKGFALFVYKTAEGAQAALVDPVKTVEGKQLTCKLAIDGKQGKRGGGPIGDGVQGPGNSHGDGIGMAQPSSIPGSYAGSVGYGGFTGGLQGQPPLGSHPLNSSLGGPGLSSVGNQAPSSLGGTGGYGGLGGPYGGYGGTGTSGFGGLSGGSGALGGAGLYRLPTSTGIPAVGYPESGHYGLSSSGYPNQHHQPTGASALPRVPPGPMYPNVPPYY 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach13g00738 415 PANTHER GEO13361P1-RELATED 52 326 - -
Bach13g00738 415 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 161 238 IPR000504 GO:0003723
Bach13g00738 415 SMART rrm1_1 70 142 IPR000504 GO:0003723
Bach13g00738 415 SMART rrm1_1 162 234 IPR000504 GO:0003723
Bach13g00738 415 MobiDBLite consensus disorder prediction 295 317 - -
Bach13g00738 415 SUPERFAMILY RNA-binding domain, RBD 152 262 IPR035979 GO:0003676
Bach13g00738 415 Gene3D - 157 268 IPR012677 -
Bach13g00738 415 SUPERFAMILY RNA-binding domain, RBD 61 144 IPR035979 GO:0003676
Bach13g00738 415 MobiDBLite consensus disorder prediction 385 404 - -
Bach13g00738 415 Gene3D - 57 156 IPR012677 -
Bach13g00738 415 FunFam UBP1-associated protein 2C isoform A 52 155 - -
Bach13g00738 415 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 69 146 IPR000504 GO:0003723
Bach13g00738 415 MobiDBLite consensus disorder prediction 288 317 - -
Bach13g00738 415 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 71 138 IPR000504 GO:0003723
Bach13g00738 415 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 163 220 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach13g00738 Bach-Chr13 12977779 12979026 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach13g00738 157 244 C2H2 Transcription Factor Family AT2G19380 38.889 1.42e-10 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach13g00738 K12741 - qsa:O6P43_001025 521.931