Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach13g00723 ATGTCTCTGAGGAAGGTTTTTCGTTCTCGTAAATTCTCCAGATCCTTCAAGGAAGTTAGAGCCCTTGAGGAGGATGAGCGAAGGAACCGACTCGGTGGTAGCGGCGGCGACGCGGATGATGATTCGGGCGAGTCCGACCAGGTTGCCGCCGCATACGGAAATGCATGGTCCTCCATGCTGCCGGAGCTCCTCGGGGAGATCATAAAGCGATTGGAGGCCAGCGAGGAGCAGTGGCCTCATCGCCAAAACGTCGTTGCTTGTGCCTGCGTGTGCAAAAGGTGGAGGGAACTGACTCGGGAGGTCGTACGGGCCCCTTCCCAGAGCGGCAAAATCACTTTCCCTTCTTGTCTTAAACAGCCAGGACTTCGTGAGTTTCCCCACCAATGTCTTATAAAGCGGAACAAGAAGACCTCAACATTTTACTTATATCTTGCCCTTACATCGTCATTCACAGATAAAGGGAAGTTCCTTTTAGCAGCTAGGAGATATAGGCGTGGTGCCCATACCGAGTATATAATATCACTTGATGCTGATGACTTATCCCAAGGGAGCAATGCTTATGTTGGAAAGTTAAGCTCGGACTTTCTTGGCACCAATTTCACAATCTATGACAGCCAGCCACCACATTGTGGTGCAAAGCCATCAAACAACAGGGCCAGCCGCCGATTTGCTAGCAAGCAGATAAGCCCTCAAGTTCCTGCTGGCAACTTTGAGGTGGGCCAAGTCTCGTACAAGTTCAACCTTTTAAAATCAAGAGGGCCTAGGAGGATGGTTTGCTCATTGAAATGCCCTGTCCCTTCATCAGGAGAAAGTTCAGATAGCCAATTGCTGGAAGGCCATAATGTAAATGATAAAGAACAAGCTGCTAATGGCTACTCAATTTTGAAAAATAAAGCTCCAAGGTGGCACGAGCATTTGCAATGCTGGTGCTTGAATTTCCATGGCCGAGTGACGGTAGCATCAGTGAAGAACTTTCAGCTAGTTGCCACTGTGGACCAAAGCCAGCCAGGAGGGAAAGGAGATGAGGAAACGGTTCTCCTCCAGTTTGGGAAAGTAGGAGATGACATTTTCACCATGGATTATAGACAGCCCTTATCTGCCTTCCAGGCCTTTGCCATTTGCCTAACAAGCTTTGGCACTAAATTGGCATGCGAGTAA 1158 0.4896 MSLRKVFRSRKFSRSFKEVRALEEDERRNRLGGSGGDADDDSGESDQVAAAYGNAWSSMLPELLGEIIKRLEASEEQWPHRQNVVACACVCKRWRELTREVVRAPSQSGKITFPSCLKQPGLREFPHQCLIKRNKKTSTFYLYLALTSSFTDKGKFLLAARRYRRGAHTEYIISLDADDLSQGSNAYVGKLSSDFLGTNFTIYDSQPPHCGAKPSNNRASRRFASKQISPQVPAGNFEVGQVSYKFNLLKSRGPRRMVCSLKCPVPSSGESSDSQLLEGHNVNDKEQAANGYSILKNKAPRWHEHLQCWCLNFHGRVTVASVKNFQLVATVDQSQPGGKGDEETVLLQFGKVGDDIFTMDYRQPLSAFQAFAICLTSFGTKLACE 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach13g00723 385 CDD F-box_AtTLP-like 56 100 - -
Bach13g00723 385 PANTHER TUBBY-RELATED 49 383 - -
Bach13g00723 385 Gene3D - 52 103 - -
Bach13g00723 385 Pfam F-box domain 56 101 IPR001810 GO:0005515
Bach13g00723 385 ProSitePatterns Tub family signature 2. 370 385 IPR018066 -
Bach13g00723 385 ProSitePatterns Tub family signature 1. 313 326 IPR018066 -
Bach13g00723 385 Gene3D Tubby Protein; Chain A 112 385 IPR025659 -
Bach13g00723 385 Pfam Tub family 117 380 IPR000007 -
Bach13g00723 385 SUPERFAMILY Tubby C-terminal domain-like 105 385 IPR025659 -
Bach13g00723 385 SUPERFAMILY F-box domain 56 99 IPR036047 GO:0005515
Bach13g00723 385 PRINTS Tubby superfamily signature 342 361 IPR000007 -
Bach13g00723 385 PRINTS Tubby superfamily signature 363 385 IPR000007 -
Bach13g00723 385 PRINTS Tubby superfamily signature 171 187 IPR000007 -
Bach13g00723 385 PRINTS Tubby superfamily signature 236 263 IPR000007 -
Bach13g00723 385 PRINTS Tubby superfamily signature 313 329 IPR000007 -
Bach13g00723 385 PRINTS Tubby superfamily signature 295 312 IPR000007 -
Bach13g00723 385 PRINTS Tubby superfamily signature 187 211 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach13g00723 Bach-Chr13 12862524 12866534 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach13g00723 51 385 TUB Transcription Factor Family AT1G53320 77.419 0.0 546
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Bach13g00723 Tub 1.6e-100 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach13g00723 K19600 - qsa:O6P43_029189 632.098
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bach13g00723 13 12862524 12866534 Bach13g00723 13 12862524 12866534 ECH