LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bach13g00667	ATGGCTGCGGTTGTTGAGGTTTCCGTTGATGCAGCAGCTGCCAACAAGTTGGACTCCAAACCCAAATCCGATTCCAAATTCAATGTGCAGAAGCTCGTTGATATGTTCACAAAGTTGAATCCTTTGGCAAAAGAATTTTTTCCTTCATCTTATTCTCATCATGATCATCCTCATCAGGACTATATTCAATTCTCACCTAACAATTTTCCGGTCAGCGATAAGCCGTCAGACAATGACAATTACCCAAACAACCGAAGGAGAAGAAACGGCTTTAACCAGGGGAGAAGAAGGTTGAATGGTAGAGCGATTAAAGCTCAAAGAGAAGATAGCGTAAGAAGAACTGTATATGTTTCTGATATAGATCAGCATGTCACTGAGGAGCGGCTTGCTGCCTTATTTACCAGTTGTGGACAAGTAATTGATTGCCGAATCTGTGGTGATCCACATTCAGTTCTTCGTTTTGCATTTGTGGAGTTTGCAGATGAGCAAGGTGCAAGAACAGCTTTAAATCTTGGTGGAACTGTGCTTGGGTACTATCCAGTCAGGGTCCTTCCTTCAAAAACTGCTATTCTTCCTGTGAATCCCACATTCCTTCCTAGGTCAGATGATGAGCGGGAAATGTGTACCAGGACTGTCTATTGTACAAATATTGATAAAAAGGTTTCACAAGCTGAAGTGAAGAACTTCTTTGAAACATCTTGTGGCGAGGTTACTCGCCTGAGGCTTTTAGGGGATCAAGTGCATTCAACACGAATAGCTTTTGTGGAATTTGCAATGGCTGAAAGTGCCATTATTGCACTAAATTGTAGTGGGATGCCTTTGGGAAGCCAGCCTATCAGGGTAAGTCCTTCAAAGACACCCGTCAGACCTAGGGTCACTCGTCCAACTTCAATTTAACCTACCAACAGAGTCCGTGACTTTACAGAGGCAATTTGGTCAACTTTCCAGTTGAGACTTGTATGGAGGAGGTGGTGAAACTTCTCTTTGGTTTCATTATTTCCATCTTTTTTTCCATCACCACTGTTGCTTTTAGCTGCCAGAGCATACCATTTCTGCTCTAGTTAATCTGTTTTTGTTAGGAACTAGTCTTCATCTTAAGTATTAGACCATGTTATCAA	1118	0.4204	MAAVVEVSVDAAAANKLDSKPKSDSKFNVQKLVDMFTKLNPLAKEFFPSSYSHHDHPHQDYIQFSPNNFPVSDKPSDNDNYPNNRRRRNGFNQGRRRLNGRAIKAQREDSVRRTVYVSDIDQHVTEERLAALFTSCGQVIDCRICGDPHSVLRFAFVEFADEQGARTALNLGGTVLGYYPVRVLPSKTAILPVNPTFLPRSDDEREMCTRTVYCTNIDKKVSQAEVKNFFETSCGEVTRLRLLGDQVHSTRIAFVEFAMAESAIIALNCSGMPLGSQPIRVSPSKTPVRPRVTRPTSI	298

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bach13g00667	298	FunFam	Polyadenylate-binding protein-interacting protein 10	204	282	-	-
	Bach13g00667	298	PANTHER	SERINE/ARGININE-RICH SPLICING FACTOR	35	292	-	-
	Bach13g00667	298	FunFam	Polyadenylate-binding protein-interacting protein 11	77	190	-	-
	Bach13g00667	298	CDD	RRM1_CID8_like	111	190	IPR034823	-
	Bach13g00667	298	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	113	188	IPR000504	GO:0003723
	Bach13g00667	298	SUPERFAMILY	RNA-binding domain, RBD	72	186	IPR035979	GO:0003676
	Bach13g00667	298	MobiDBLite	consensus disorder prediction	278	298	-	-
	Bach13g00667	298	Pfam	Ataxin-2 C-terminal region	35	50	IPR009818	-
	Bach13g00667	298	SUPERFAMILY	RNA-binding domain, RBD	200	292	IPR035979	GO:0003676
	Bach13g00667	298	Gene3D	-	198	292	IPR012677	-
	Bach13g00667	298	Gene3D	-	69	189	IPR012677	-
	Bach13g00667	298	SMART	rrm1_1	114	184	IPR000504	GO:0003723
	Bach13g00667	298	SMART	rrm1_1	211	282	IPR000504	GO:0003723
	Bach13g00667	298	MobiDBLite	consensus disorder prediction	64	78	-	-
	Bach13g00667	298	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	212	279	IPR000504	GO:0003723
	Bach13g00667	298	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	115	177	IPR000504	GO:0003723
	Bach13g00667	298	CDD	RRM2_CID8_like	206	287	IPR034825	-
	Bach13g00667	298	MobiDBLite	consensus disorder prediction	64	100	-	-
	Bach13g00667	298	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	210	286	IPR000504	GO:0003723

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bach13g00667	Bach-Chr13	12142354	12146720	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bach13g00667	110	267	Eukaryotic Initiation Factors Gene Family	AT1G34140	26.708	3.74e-12	64.3

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bach13g00667	-		-	qsa:O6P43_001153	495.352